Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1885
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0623 - 19429029-19430207                                         28   6.2  
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066...    28   6.2  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    28   8.1  

>08_02_0623 - 19429029-19430207
          Length = 392

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 516 LRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGC 632
           + YI  P +      T     L +AC  +LIE L ++GC
Sbjct: 350 MEYIASPGMLAAVMATKGFKELKVACPSLLIEILEKVGC 388


>02_02_0693 +
           13006243-13006245,13006439-13006501,13006608-13006687,
           13007964-13008072,13009027-13009074,13011044-13011203,
           13011295-13011458,13011549-13011902
          Length = 326

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 487 ALRTRNMRGGA***LGSRRLKHTSWSSNVSGPAST 383
           AL+ RN++ GA   L + R+K +SW S  SG + T
Sbjct: 283 ALKRRNIKAGAASALMASRVKPSSWQSAGSGSSRT 317


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 240 AAPITATDSLSQALKANIIPNQEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQE 419
           A   ++  S++ A     +P  E     + +D AVE L   ++ LC  +D   E F   +
Sbjct: 274 ATTASSIPSITSAAMVTSVPFNETKKAETDMDKAVENLDKTIQDLCTKIDRMLEAFRHTK 333

Query: 420 VCFSL 434
           V  SL
Sbjct: 334 VDLSL 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,114
Number of Sequences: 37544
Number of extensions: 324332
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)