Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1885
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002694-1|AAH02694.1|  208|Homo sapiens MED18 protein protein.       122   2e-27
AL353622-1|CAI19132.1|  208|Homo sapiens mediator of RNA polymer...   122   2e-27
AK000052-1|BAA90910.1|  208|Homo sapiens protein ( Homo sapiens ...   122   2e-27
AB107222-1|BAD06869.1|  208|Homo sapiens p28b protein.                122   2e-27

>BC002694-1|AAH02694.1|  208|Homo sapiens MED18 protein protein.
          Length = 208

 Score =  122 bits (293), Expect = 2e-27
 Identities = 60/112 (53%), Positives = 82/112 (73%)
 Frame = +3

Query: 306 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 485
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+ F L+     QA P +LR R+
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARR 74

Query: 486 ALDARDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGCRIE 641
           ++D    P+ LRY+GQP++GDKNR  +VR+ +DIA S  L +FL E+G R++
Sbjct: 75  SMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMD 126


>AL353622-1|CAI19132.1|  208|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 18 homolog (S. cerevisiae)
           protein.
          Length = 208

 Score =  122 bits (293), Expect = 2e-27
 Identities = 60/112 (53%), Positives = 82/112 (73%)
 Frame = +3

Query: 306 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 485
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+ F L+     QA P +LR R+
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARR 74

Query: 486 ALDARDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGCRIE 641
           ++D    P+ LRY+GQP++GDKNR  +VR+ +DIA S  L +FL E+G R++
Sbjct: 75  SMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMD 126


>AK000052-1|BAA90910.1|  208|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20045 fis, clone COL00548. ).
          Length = 208

 Score =  122 bits (293), Expect = 2e-27
 Identities = 60/112 (53%), Positives = 82/112 (73%)
 Frame = +3

Query: 306 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 485
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+ F L+     QA P +LR R+
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARR 74

Query: 486 ALDARDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGCRIE 641
           ++D    P+ LRY+GQP++GDKNR  +VR+ +DIA S  L +FL E+G R++
Sbjct: 75  SMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMD 126


>AB107222-1|BAD06869.1|  208|Homo sapiens p28b protein.
          Length = 208

 Score =  122 bits (293), Expect = 2e-27
 Identities = 60/112 (53%), Positives = 82/112 (73%)
 Frame = +3

Query: 306 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 485
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+ F L+     QA P +LR R+
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARR 74

Query: 486 ALDARDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGCRIE 641
           ++D    P+ LRY+GQP++GDKNR  +VR+ +DIA S  L +FL E+G R++
Sbjct: 75  SMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMD 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,055,781
Number of Sequences: 237096
Number of extensions: 1906028
Number of successful extensions: 3125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)