Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1883
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 33 0.062
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 33 0.062
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 32 0.083
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.33
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 30 0.44
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 28 1.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.3
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe... 27 3.1
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 3.1
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 4.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 4.1
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 4.1
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.1
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.4
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 7.2
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 26 7.2
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 7.2
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 7.2
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 9.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.5
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 25 9.5
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 25 9.5
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.7 bits (71), Expect = 0.062
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Frame = +1
Query: 457 DEDQDLSTLETADKEE----DKDKSNYDSLEKLHDITVLEE--DNIGDD--EDMLDVADD 612
DE++DL L A+K++ D+D+S + + ++ + E+ D +GD +D D++D
Sbjct: 4318 DEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEVGDKQLQDGQDISDI 4377
Query: 613 PESGD 627
++G+
Sbjct: 4378 KQTGE 4382
Score = 29.9 bits (64), Expect = 0.44
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 424 DFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDI-TVLEEDNIGDD----E 588
D K E +D DL ++ +E+K++++ + E + D LEE+N D+ +
Sbjct: 4089 DLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTLDEDIQQD 4148
Query: 589 DMLDVADDPE 618
D D+A+D E
Sbjct: 4149 DFSDLAEDDE 4158
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 469 DLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDMLDVADD 612
DL E + E D + DS+ ++ + EE+N DE++ D+ +D
Sbjct: 3947 DLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPED 3994
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 421 NDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDED 591
N+ P A E + D ++ DK ++ K D++VLEED+ +DED
Sbjct: 217 NNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSVLEEDDDDEDED 273
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +1
Query: 439 EDTIYADEDQDLSTLETADKEEDKD---KSNYDSLE-----KLHDITVLEEDNIGDDED 591
ED DED++L E ++EE+K+ SNYD E L D LE D DD D
Sbjct: 265 EDDDDEDEDEELEG-EKEEEEEEKEKPEISNYDETEGKVNFSLEDSESLEFDEGSDDYD 322
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 520 NYDSLEKLHDITVLEEDNIGDDEDML---DVADDPE 618
N DSL + D +LEED D+E++L D +DD E
Sbjct: 333 NTDSLAEDED-DILEEDEDEDEEELLAIFDASDDSE 367
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 32.3 bits (70), Expect = 0.083
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 433 PMEDTIYADED---QDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDMLDV 603
P + TI ED ++ + DK+ED+D N + E+ D EE++ DDE+ D
Sbjct: 69 PNDTTINKGEDGNENEVDNVNNNDKKEDED--NVEENEEEADANEEEEEDEEDDEE--DE 124
Query: 604 ADDPESG 624
D+ ESG
Sbjct: 125 EDEDESG 131
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/77 (20%), Positives = 41/77 (53%)
Frame = +1
Query: 367 AMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLH 546
+++ N +L+ +++N+ N+ +E+ E A+K+E+ + ++ D +++
Sbjct: 82 SIAKNKELIEEEWNDFQ-NEIGIIEENAVEQEITLQQQQLLAEKDEENEIADNDLEPEVY 140
Query: 547 DITVLEEDNIGDDEDML 597
DI EE +G+ D++
Sbjct: 141 DILYEEESKLGESRDLI 157
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 439 EDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDM 594
E +ADE D E +EED S +DS E+ H++ + D+ GD+ED+
Sbjct: 86 EPQTFADEFIDDEAKECEGEEED---SVFDSDEE-HEVKPMFSDDSGDEEDL 133
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 478 TLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDMLDVAD---DPESGDWYPDFD 645
T++ D +++ ++ + ++E+ D + EED D+D D + D GD Y D+D
Sbjct: 144 TIKAQDLKDESSEAAHPNIEEEPDEGLEEEDEDFGDDDDNDYGENYFDNGEGDDYDDYD 202
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 421 NDFKPMEDTIYAD-EDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDML 597
+ + +D +Y D D + + ++D+ S +S E+ D+ EE+ DD++
Sbjct: 206 SQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYERDEDVDEEEEE---DDDENN 262
Query: 598 DVADDPESGD 627
D DD + +
Sbjct: 263 DEGDDEDENE 272
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 436 MEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDE--DMLDVAD 609
+E T+ DE+ S E D +E K +EK+ T +E I + + D LD+ D
Sbjct: 161 LETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITNSQYNDTLDMED 220
>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 370 MSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHD 549
MS K ++ K + D P D ++D D L ++ + +D D S + + +HD
Sbjct: 1 MSEEPKKIDIKGKGRAIEDLIPDIDD--EEDDVDFQDLSSSGESDDSDDSMQEDYDDIHD 58
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 436 MEDTIYADEDQDLS--TLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDMLD 600
M D + +E+ LS ++ E+DK S+Y+ L D+ L D DD D D
Sbjct: 11 MNDANFKEENAHLSDASIHFGSSEQDKTPSDYE----LDDVLDLYNDTTEDDADDAD 63
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 4.1
Identities = 7/33 (21%), Positives = 22/33 (66%)
Frame = +1
Query: 328 LRSEIDDLTANMIAMSANVKLLNQKYNNKHFND 426
++ ++D++ +++ +S+ + ++YN KH N+
Sbjct: 1 MKKDLDEIDTDIVTLSSFILQEQRRYNQKHKNE 33
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 442 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHD-ITVLEEDNIG---DDEDMLDVAD 609
D + +DED D ST + ++ K+ + + E +H + +DN+ D M +
Sbjct: 407 DLVMSDEDDDDSTFSDKNSKDFKETEDMNGAEDMHGRAPQITKDNLNLTTTDSPMSEA-- 464
Query: 610 DPESGDWYPD 639
+P S + Y D
Sbjct: 465 EPVSEEEYKD 474
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
2|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/127 (18%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +1
Query: 430 KPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDM---LD 600
K E +E ++ + ET E+D ++ + D +E+ D ++ + D+E++ LD
Sbjct: 668 KDSEGMFAGEEVEEDAFGETEMDEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLD 727
Query: 601 -VADDPESGDWYPDFDKRADKVMNSNMVHLRPDEIAGRSCIXEGQRAASLEREGKSRNX* 777
V +D ++ D + +++MN + +++A E ++A++ E++ ++
Sbjct: 728 KVLEDADAK--VKDEESSEEELMNDEQMLALDEKLA--EVFRERKKASNKEKKKNAQETK 783
Query: 778 TRXXKFR 798
+ +F+
Sbjct: 784 QQIVQFK 790
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 211 LSGLRTASQNHHPSSSWTHPSLPSWFPFACTS 116
LSG+ P+SS TH S PS P TS
Sbjct: 241 LSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 517 SNYDSLEKLHDITVLEEDNIGDDEDMLDVADDPES 621
++Y D TV+EED + D DV+DD ++
Sbjct: 305 TSYPDYAVKQDETVVEEDGSSGEGDWEDVSDDSDN 339
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 418 FNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLE 537
+ D+ +D +ED + D +D D S+ DSLE
Sbjct: 307 YPDYAVKQDETVVEEDGSSGEGDWEDVSDDSDNSSLDSLE 346
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 493 DKEEDKDKSNYDSLEKLHDITVLEEDNIGDDEDMLDVADD 612
+ +D NY+ + + I +NI + +DM DV+DD
Sbjct: 61 ENSNPQDGPNYEDFDFMGSIHKEFGNNINEMDDMEDVSDD 100
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 505 DKDKSNYDSLEKLHDITVLEEDNIGDDEDMLDV--ADDPESGDW-YPDFDKR 651
DKD S Y K D + + D+E L V AD SG + Y DF +R
Sbjct: 88 DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQR 139
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 442 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKL 543
DT+ + + D T +T++K+E ++ + LEKL
Sbjct: 64 DTMEDENENDEDTEQTSEKKETEETPKENPLEKL 97
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 448 IYADE-DQDLST-LETADKEEDKDKSNYD 528
+YAD D +ST LE EEDK +S+Y+
Sbjct: 337 LYADSHDMGVSTPLEDGSSEEDKHQSDYN 365
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 97 LIPDPITMYTQKETMKEVKDASKNLM 174
L PDP +QK T+K+ K A L+
Sbjct: 771 LAPDPPPFTSQKITLKQTKQADMRLL 796
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 511 DKSNYDSLEKLHDITVLEEDNIGDDEDMLDVADDPESGDWYP 636
D + + LEK + V E+ NI D +L P S ++YP
Sbjct: 763 DPNRHRVLEKGTEKVVPEQKNIPPDISLLMSGIGPSSDEYYP 804
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 273 PNDSRSHRHYP--SFHSPIALVHCRASVLPLKITTHQVLGRILHFL 142
PN+S++ P F SP+ L RA V+PL++ + ++LH L
Sbjct: 16 PNESKTGNESPEKKFSSPVLLQ--RAKVIPLRLEYEE--RKLLHLL 57
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 436 MEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNI 576
+E + + D D ST+E + ++K Y ++L + VL+ +N+
Sbjct: 87 LEKELGSFNDMDSSTIEDQIRNQEKKDPYYYIRKELDVLKVLDHENV 133
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 81 HHCVNTAPANGRCHC 37
H+C T P GRC C
Sbjct: 283 HYCPETIPYTGRCAC 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,037
Number of Sequences: 5004
Number of extensions: 58342
Number of successful extensions: 266
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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