Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1881
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    30   0.44 
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   5.4  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 260 FHRRRPVHYGRLANTGPQVHTEFVQXVPERFVRGP---EVCYEDGRDAVRGASAXNIDEG 430
           FH      + R+ANT P   TEF++     FV+GP       E+   +V  A     DEG
Sbjct: 60  FHNHCLESWCRVANTCPLCRTEFLKVDVLEFVKGPWYRAYPVEEKTQSVANAGEPFEDEG 119

Query: 431 PE 436
            E
Sbjct: 120 SE 121


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 407  KHHVQHPSHPHNRPLALEQTAQVHXARTQYELVGR 303
            KH +++  +PH++PL        H   + + L+ R
Sbjct: 942  KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFRLLTR 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,704
Number of Sequences: 5004
Number of extensions: 45250
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)