Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1881
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 33 0.26
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 31 1.4
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 29 3.3
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590... 29 4.3
08_01_0027 - 195321-195932,197206-197415 29 5.7
10_08_0069 - 14627547-14627570,14628305-14628404,14628500-146286... 28 9.9
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 28 9.9
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486... 28 9.9
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 33.1 bits (72), Expect = 0.26
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 231 SVAALLRSERFTDVVLCT-MDGSQIPAHKFILSSCXVYLSGLFEGQRSVMRMGGMLYVVL 407
++A L + F+D + + +PAHK +L SC + L + ++
Sbjct: 198 ALANFLENWDFSDSIFVVGSERKVVPAHKVVLGSCGDFPFNLMMSRPAIEL--------- 248
Query: 408 PPXISTKALKILVEYMYKGETTVSNEILDTVLKAGEVLXIRGL 536
P +S L L+EY+Y G T +S L ++L+ ++ L
Sbjct: 249 -PSVSYPVLHSLLEYIYTGSTQISEWQLVSLLELSSQFKVKPL 290
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 246 LRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLFEGQRSVMRMGGMLYVVLPPXIST 425
LR DV + T DG I AH F+L + L + E R + V+ +S+
Sbjct: 10 LRPAVAADVQVVTSDGKSIAAHSFVLGTASPVLERMIERARRGWNAECTIRVL---GVSS 66
Query: 426 KALKILVEYMYKGETTVSNE 485
A+ ++ +Y T +E
Sbjct: 67 DAVFAFLQLLYASRVTPEDE 86
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2
Query: 334 LHELSMNLWAGICEPSIVHRTTSVKRSERNRAATEPFRCELCECHF 197
L L++ LW+ +C P + T ++ R + + C + E H+
Sbjct: 639 LQHLNLVLWSPLCMPKGIGNLTKLQTLTRYSVGSGNWHCNIAELHY 684
>08_02_1121 +
24457413-24457528,24458395-24458552,24458927-24459042,
24459735-24460400
Length = 351
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 186 TYQLKWHSHSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSS 329
++Q+K S ++ L+ S+A +L+ TD+ + DGS I AH+ IL+S
Sbjct: 161 SHQIKKSSDNTALS-SLARMLQEGILTDITINATDGS-IMAHRAILAS 206
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 228 GSVAALLRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLF 356
G ++ +L DV + T DG + AHK IL+SC +F
Sbjct: 96 GCLSRMLTESIHADVTINTTDGV-LKAHKAILASCSPVFESMF 137
>10_08_0069 -
14627547-14627570,14628305-14628404,14628500-14628642,
14628759-14628863
Length = 123
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 243 LLRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLFEGQR 368
+LR DV + T DG I H F+L + L + E R
Sbjct: 9 VLRPAVAADVQVVTSDGKSIATHSFVLGTASPVLERMIERAR 50
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 216 SHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSS-CXVYLSGLFEGQRSVMRMGGM 392
S+++ + LL + TD+ +DG PAHK +L++ V+ + LF M+ M
Sbjct: 295 SNMSQHIGQLLTDGKRTDITF-EVDGEVFPAHKVVLAARSPVFRAQLF----GPMKDKNM 349
Query: 393 LYVVLPPXISTKALKILVEYMYKGE 467
+ + + K L+ +MY E
Sbjct: 350 KRITI-EDMEASVFKALLHFMYWDE 373
>03_06_0266 +
32746379-32746836,32747898-32748273,32748367-32748640,
32750605-32750789
Length = 430
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = +3
Query: 204 HSHSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSS-CXVYLSGLFE----GQR 368
H S + LL ++ DV+ C + G + AH+ +L++ + S LFE ++
Sbjct: 197 HVPESDIGYHFGTLLDNQEGVDVI-CNVAGEKFHAHQLVLAARSSFFRSELFEHESDEEK 255
Query: 369 SVMRMGGMLYVVLPPXISTKALKILVEYMYKGETTVSNEI 488
+ + + ++ + K K ++ +MY+ +E+
Sbjct: 256 NEVDTSNEIKEIVIDDMEPKVFKAVLHFMYRDNLVGDDEL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,155,342
Number of Sequences: 37544
Number of extensions: 328442
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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