Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1881
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 35 0.059
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 35 0.078
Z69902-7|CAA93769.1| 618|Caenorhabditis elegans Hypothetical pr... 33 0.18
AB023424-1|BAA82800.1| 618|Caenorhabditis elegans kel-1 protein. 33 0.18
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 29 3.9
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc... 28 6.8
AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical ... 28 6.8
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical
protein F38H4.7 protein.
Length = 602
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +3
Query: 195 LKWHSHSSHLNGSVAALLRSERFTDVVLCT-MDGSQ--IPAHKFILSSCXVYLSGLFEGQ 365
L W + L + + +E DV +D S+ IPAHKF+LS V +F G
Sbjct: 166 LGWQADKKTLRERIEHMYCNETLADVFFVVGIDDSRQRIPAHKFVLSIGSVVFDAMFNGG 225
Query: 366 RSVMRMGGMLYVVLPPXISTKALKILVEYMYKGETTVSNEILDTVL 503
+ L + L P + A L++++Y E + E + T L
Sbjct: 226 LTPKNTEEALEIEL-PDVEPSAFLALLKFLYSDEVKIEAESVMTTL 270
>AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical
protein R12E2.1 protein.
Length = 531
Score = 35.1 bits (77), Expect = 0.059
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 213 SSHLNGSVAALLRSERFTDVVLCTMD----GSQIPAHKFILSSCXVYLSGLFEGQRSVMR 380
+SH SV L + DV LC + +I AH+ +LS+C Y +F Q +
Sbjct: 35 NSHFANSVLQQLGGLKNRDV-LCDVTLICGWKRINAHRVVLSACSPYFLSMFTSQMAECY 93
Query: 381 MGGMLYVVLPPXISTKALKILVEYMYKGETTVSNEILDTVLKAGEVLXI 527
M + + P L+ L+E+ Y G + + + +L A +L I
Sbjct: 94 MREINMEEIEP----PTLEALIEFCYTGAIAIDDSNVQDILPAACLLQI 138
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 34.7 bits (76), Expect = 0.078
Identities = 26/103 (25%), Positives = 44/103 (42%)
Frame = +3
Query: 150 AVDLERTMTSTDTYQLKWHSHSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSS 329
A R+++S +T LK S+H + L + F+D ++ G + P H IL++
Sbjct: 196 ASSTSRSLSSPNTKCLKIDESSAH--DAFTEFLSTGEFSDFIIVASCGREFPTHMCILAA 253
Query: 330 CXVYLSGLFEGQRSVMRMGGMLYVVLPPXISTKALKILVEYMY 458
Y L + M L IS + L +L+ +MY
Sbjct: 254 RSEYFKVLLRNHSTKEFMSKRLQF---DDISARTLDVLLRHMY 293
>Z69902-7|CAA93769.1| 618|Caenorhabditis elegans Hypothetical
protein C47D12.7 protein.
Length = 618
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 300 IPAHKFILSSCXVYLSGLFEG--QRSVMRMGGMLYVVLPPXISTKALKILVEYMYKGETT 473
I AH+ ILS+ Y +F G + S R ++ + + L L++YMY G
Sbjct: 82 IHAHRVILSASSSYFRAMFTGGLRESTQR------IIPIKEVDVEVLSQLIDYMYTGRMR 135
Query: 474 VSNEILDTVLKAGEVLXI 527
+ + + T+L +L +
Sbjct: 136 IDEQNVQTILATASLLQL 153
>AB023424-1|BAA82800.1| 618|Caenorhabditis elegans kel-1 protein.
Length = 618
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 300 IPAHKFILSSCXVYLSGLFEG--QRSVMRMGGMLYVVLPPXISTKALKILVEYMYKGETT 473
I AH+ ILS+ Y +F G + S R ++ + + L L++YMY G
Sbjct: 82 IHAHRVILSASSSYFRAMFTGGLRESTQR------IIPIKEVDVEVLSQLIDYMYTGRMR 135
Query: 474 VSNEILDTVLKAGEVLXI 527
+ + + T+L +L +
Sbjct: 136 IDEQNVQTILATASLLQL 153
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/99 (23%), Positives = 40/99 (40%)
Frame = +3
Query: 210 HSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLFEGQRSVMRMGG 389
H L+ S + S +DV L DG++ AH+ IL+ S F
Sbjct: 46 HLDELSQSFDEIFTSTDHSDVTLVLDDGTEFAAHRLILA----VRSSFFRAMLYTGFQES 101
Query: 390 MLYVVLPPXISTKALKILVEYMYKGETTVSNEILDTVLK 506
+V ++ A + ++ YMY + + LD +L+
Sbjct: 102 HQQLVTLQETNSVAFRAVLRYMYTSKIDFAGVELDILLE 140
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
D2045.2 protein.
Length = 1792
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 365 LALEQTAQVHXARTQYELVGRYLRAVHSAQDDVGETLRTQQSR 237
LAL + H ++++ YL A+ +DDV E++R R
Sbjct: 1140 LALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182
>Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical
protein F34D10.5 protein.
Length = 280
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 274 TTSVKRSERNRAATEPFRCELCECHFN*YVSVE 176
T +KR R P++CE CE F S+E
Sbjct: 173 TFDLKRHTRTHTGVRPYKCEQCEKSFTQRCSLE 205
>AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc
finger transcriptionfactor protein.
Length = 280
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 274 TTSVKRSERNRAATEPFRCELCECHFN*YVSVE 176
T +KR R P++CE CE F S+E
Sbjct: 173 TFDLKRHTRTHTGVRPYKCEQCEKSFTQRCSLE 205
>AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical
protein Y49F6C.5 protein.
Length = 243
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 255 ERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLFEGQRSVMRMGGMLYVVLPPXISTKAL 434
E F+DV+L D KF L+S Y LF G + + I++
Sbjct: 115 EEFSDVILAVEDEKFYVLKKF-LASHSSYFKSLFFGSFAEAEKS----EITLSEINSAGF 169
Query: 435 KILVEYMYKGETTVSNEILDTVL 503
+ L+E +Y GE+ + +E +D +L
Sbjct: 170 QCLLEVLY-GESAIDDENVDGIL 191
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 404 HHVQHPSHPHNRPLA 360
HH HP HPH P A
Sbjct: 783 HHAHHPVHPHRGPRA 797
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,556
Number of Sequences: 27780
Number of extensions: 270146
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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