Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1881
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          66   4e-13
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      62   6e-12
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.20 
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      26   0.47 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 66.1 bits (154), Expect = 4e-13
 Identities = 36/116 (31%), Positives = 61/116 (52%)
 Frame = +3

Query: 189 YQLKWHSHSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSGLFEGQR 368
           Y L+W+++ S++      LL++E F DV L   + S + AHK +LS+C  Y   L     
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEAS-LKAHKVVLSACSSYFQKLLLSNP 69

Query: 369 SVMRMGGMLYVVLPPXISTKALKILVEYMYKGETTVSNEILDTVLKAGEVLXIRGL 536
                     +++P  +    LK ++E++Y+GE  VS   L ++LK  + L I+GL
Sbjct: 70  CKHPT-----IIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 62.1 bits (144), Expect = 6e-12
 Identities = 38/127 (29%), Positives = 59/127 (46%)
 Frame = +3

Query: 171 MTSTDTYQLKWHSHSSHLNGSVAALLRSERFTDVVLCTMDGSQIPAHKFILSSCXVYLSG 350
           M  T  + L+W+++ S +  +   L   E F DV L   DG  + AH+ +LS+C  Y   
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLAC-DGRSLKAHRVVLSACSPYFRE 59

Query: 351 LFEGQRSVMRMGGMLYVVLPPXISTKALKILVEYMYKGETTVSNEILDTVLKAGEVLXIR 530
           L +             V++   ++   L  LVE++Y GE  V    L + LK  EVL + 
Sbjct: 60  LLKSTPCKHP------VIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVS 113

Query: 531 GLWRXTD 551
           GL +  D
Sbjct: 114 GLTQQAD 120


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
 Frame = -1

Query: 404 HHVQHPSHPHNRP-------LALEQTAQVHXARTQYELVGRYLRAVHSAQDDVGETLRTQ 246
           HH  H  HPH +P        A +Q  Q H     Y+   +   A   +Q  +    + Q
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQ 228

Query: 245 QSRHRTV 225
             +H+ V
Sbjct: 229 AQQHQGV 235


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 171 MTSTDTYQLKWHSHSSHLNGSVAALLRSERFTDVVL 278
           M  T  + L+W+++ S +  +   L   E F DV L
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTL 36


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 250 RNRAATEPFRCELC 209
           RN   ++PF+CE C
Sbjct: 9   RNHFGSKPFKCEKC 22


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 298 CEPSIVHRTTSVKRSERNRAATEPFRCELC 209
           C+   V +  +++R  R      P+ CELC
Sbjct: 43  CDRQFV-QVANLRRHLRVHTGERPYACELC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,536
Number of Sequences: 438
Number of extensions: 3505
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)