Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1880
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 28 1.4
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 28 1.4
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.3
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 27 4.3
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 5.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.7
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 7.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 7.6
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 1 CLLSKLFIIYISDPSILNNFNGYCVSNKTRN*RSILNAN 117
C S+ ++ ++DP IL + G CV ++ N R ++ +
Sbjct: 87 CAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCS 125
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 1 CLLSKLFIIYISDPSILNNFNGYCVSNKTRN*RSILNAN 117
C S+ +I ++DP +L + G CV ++ N R ++ +
Sbjct: 84 CAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCS 122
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 210 NPFIPMYPARSVXTRVVKKKCTCMSQKRFFNRGVSKXKYNNNILKE 347
N F PM+ RS+ R ++K + +S R FN+ K +N+NILK+
Sbjct: 24 NMFNPMF--RSL--RPIQKSFSEISILRVFNKPPIKKFHNSNILKD 65
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 147 GFEMGKLEIEPGKPNKERHX-ENPFIPMYPARSV 245
G +G++E + K + +H PFIP P RS+
Sbjct: 86 GHRVGRVESDKTKEAERQHKPRKPFIPKNPKRSI 119
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = +3
Query: 189 NKERHXENPFIPMYPARSVXTRVV--KKKCTCMSQKRFFNRGV---SKXKYNNNILKEPV 353
+++ N + +YP+ + + V + K +S+ + + S+ N + +
Sbjct: 478 SEQNRGGNKHLELYPSTAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKE 537
Query: 354 LKILQCCDNNDISKKCSLPTENNETLN--SDTLNLCTLVQNCNQLKIS 491
L DN+D+ +K + P +NE+LN S L +L + Q K S
Sbjct: 538 ESALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPS 585
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 489 SSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNN 611
S ++NE P K + +++ K + D +KEK + QN+
Sbjct: 525 SKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAADLQNS 565
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.7
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +3
Query: 375 DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWR 554
+NND+ K E+N++L ++ +L +N LK +E + S K R
Sbjct: 659 ENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALR--FSKLEAKNLR 716
Query: 555 NDIAKLKEKNQAKQSTQNN 611
I LK K++ ++ +N+
Sbjct: 717 EVIDNLKGKHETLEAQRND 735
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 7.6
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 306 GVSKXKYNN--NILKEPVLKILQCCDNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQ 479
G+++ K N +L + + + DNN + SL N LN ++ N
Sbjct: 317 GITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSL----NSDLNCLKFTHPHIIDTAN- 371
Query: 480 LKISSESNEPPTKSTHSDSSTKWWRNDIAK 569
I + + PP+K + +TKW R +I K
Sbjct: 372 --IYNHTRGPPSKPSLKWLATKWLRREIQK 399
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 333 NILKEPVLKILQCCDNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSES 500
NIL+E +LKI + I KC+ TE + + NL L + IS +S
Sbjct: 265 NILQE-ILKIESTSTTSQIKPKCNYETEITDCMEKLQSNLSELKSSRKSSLISLKS 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,691
Number of Sequences: 5004
Number of extensions: 67613
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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