Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1880
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    33   0.28 
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    30   2.6  
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    28   8.0  

>05_05_0005 +
           21442819-21442916,21443053-21443119,21443226-21443291,
           21443368-21443414,21443480-21443543,21443627-21443707,
           21443781-21443823,21443912-21443961,21444262-21444343,
           21445045-21445120,21445451-21445558,21445782-21445833,
           21445911-21446570,21446652-21448067
          Length = 969

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 414 ENNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHS----DSSTKWWRN 557
           ENN  ++S  + L + V N NQ + SSES+ P +  ++S    D S+  W N
Sbjct: 429 ENNSPVSSSGVKLTSAVSNKNQAEQSSESSRPHSGVSYSSKFGDISSNGWTN 480


>01_06_0787 -
           31999632-32000045,32000128-32000214,32000295-32000584,
           32000670-32000844,32000930-32001142,32001227-32001328,
           32001418-32001822,32001922-32002134,32002312-32002357,
           32002602-32002867,32003936-32004012,32004095-32004170,
           32004339-32004418,32004945-32005036,32005132-32005171,
           32005301-32005400,32005815-32005962,32006071-32006153,
           32006207-32006383
          Length = 1027

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 471 CNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDV 650
           C    + + S++    +T +D+  +  R + AKLK + +  + T   S      +PPC  
Sbjct: 430 CLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEIERLRGTPGKSAADGIASPPCSA 489

Query: 651 TIG 659
           + G
Sbjct: 490 SAG 492


>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 507 PPTKSTHSDSSTKWWRNDIAKL 572
           P     HS S++ WW +D+A+L
Sbjct: 175 PAALPAHSSSASPWWAHDVAEL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,320
Number of Sequences: 37544
Number of extensions: 370485
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)