Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1880
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    30   1.8  
Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK355.6 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 375 DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNE 506
           + + +SK+C+   ENNE LN+ ++     +Q    LK+S    +
Sbjct: 135 ETDRLSKECAFRVENNEKLNASSVCQSWFLQGMYSLKVSGNRRD 178


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
            F20B10.1 protein.
          Length = 1180

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 496  SEDIFNWLQFCTNVHKFNVSLFNVSLFSV-GRLHFFD 389
            S+DI + + FC + H FNVS+  + + ++ G   FF+
Sbjct: 980  SDDIMHDISFCASKHHFNVSVDGMQVITIEGNWTFFE 1016


>U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical
           protein C52B11.3 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +3

Query: 249 TRVVKKKCTCMSQKRFFNRGVSKXKYNNNILKEPVLKILQCCDNNDISKKCSLPTE-NNE 425
           TR++ K+ +C S     +RG      NNN +++P+L+  + C ++ IS+         N 
Sbjct: 296 TRLLLKQVSCKSLN---DRGEHN---NNNTVRQPLLRGTEGCHSDSISRSSQRNFRGRNV 349

Query: 426 TLNSDTLNLCTLVQNCNQLKISSES 500
           T+ S+  +    V   +++ +SS S
Sbjct: 350 TIGSNCSSTLLQVDQPDRMSLSSNS 374


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 472 QFCTNVHKFNVSLFNVSLFSVGRLHFFDISLL 377
           Q CT+   F++ LFN SL+++  + F  IS L
Sbjct: 20  QICTSSQSFDLELFNSSLYNLVPIRFVPISTL 51


>Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical
           protein K01H12.4 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 510 PTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPP 641
           P +   SD   K W   + K K+KN  K S +   C   A  PP
Sbjct: 232 PMEFVSSDGRVKLWLQPLEKQKKKNSEK-SKKRERCIDDAPIPP 274


>Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical
           protein T23F11.6 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 SKXKYNNNILKEPVLKILQCCDNNDISKKC 401
           SK KY N    E  LK+ QCC +N + ++C
Sbjct: 69  SKTKYVNEEESEYSLKMEQCCVDNLLPERC 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,907
Number of Sequences: 27780
Number of extensions: 376889
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)