Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1879
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    30   0.31 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   5.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   6.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.7  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.7  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 514  QKLVEKNA-LKSQLRTLQEQLAEMHEKYVQLCNRVG-KESETV 636
            Q+L E+NA LK Q RT + QLA +  KY +  + +  KE+E V
Sbjct: 1028 QELREENASLKDQCRTYESQLASLVSKYSETESELNKKEAELV 1070


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 238  APKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKKRKLY 402
            A KP P    S A  SSP  +    A V N VS   + P P  P     +K+ LY
Sbjct: 1059 ASKPAPSTVTSAA--SSPSNISKPSAPVANNVSKPSAVPPPPPPPPAEVEKKDLY 1111


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 541 KSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDV 663
           K QLR   +Q+ E  +  +   ++    S+TVDN    S V
Sbjct: 168 KKQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLSSIV 208


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -2

Query: 734 VXXAGNSLPXXAGSDFGIDSSICSTSLXAPSLSTVSDSFPTLLHSCTYFSCISANCSCKV 555
           V  + +S+P  + SDF    +  S+ + + S+ +   S  ++L S T      ++ S  +
Sbjct: 538 VLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST---SSPSSTSLSI 594

Query: 554 LSCDLSAFFST 522
            S   S+ FS+
Sbjct: 595 SSSSTSSTFSS 605


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 505 PIQQKLVEKNALKSQLRTLQEQLAEMH 585
           PIQ +LVE N L   L+ LQ Q    H
Sbjct: 271 PIQGELVELNKLLQHLQLLQNQRITSH 297


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 725 AGNSLPXXAGSDFGIDSSICSTSLXAPSLSTVSDS 621
           + NS      S FG+ SS  S+ L  PSLS++++S
Sbjct: 41  SSNSGLNRRNSVFGLPSSGLSSRLSKPSLSSINNS 75


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 496 ERPPIQQKLVEKNALKSQLRTLQEQLAEMHEK 591
           E+PPI QK+   +   SQL+ L +++ +++ +
Sbjct: 206 EKPPIVQKIYFTSRTHSQLQQLVQEIKKLNNQ 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,491
Number of Sequences: 5004
Number of extensions: 36852
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)