Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1879
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0770 - 24459973-24460093,24460370-24460923                       31   0.74 
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175...    29   3.0  
10_01_0109 + 1338525-1338590,1338744-1339325                           29   5.2  
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031...    28   6.9  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   9.1  
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    28   9.1  

>06_03_0770 - 24459973-24460093,24460370-24460923
          Length = 224

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/99 (19%), Positives = 40/99 (40%)
 Frame = +1

Query: 103 EKRSPERPCSHDSRPDLDDALLSLENPGNSHXXXXXXXXXXENLIAPKPEPEDRDSDAQR 282
           +K SPE   +H  RP +   ++ +  P              + L   + + +   ++   
Sbjct: 25  KKGSPEAAAAHKERPKI--RIIHIIAPEIIKTDVANFRDLVQRLTGKQQQQQQESAETTL 82

Query: 283 SSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKKRKL 399
             P P+ V   + E + +  R +PA  +  +   KK+K+
Sbjct: 83  PPPSPVAVLDEKKEKVTTKKRPAPAEDESMMRKKKKKKI 121


>02_01_0265 -
           1754861-1755063,1755186-1755360,1755558-1755653,
           1756110-1756256,1756343-1756511,1756661-1756812,
           1756898-1756968,1757064-1757247,1757332-1757523,
           1757664-1757771
          Length = 498

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 526 EKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEESI 684
           E++  KS+L   +  +A   ++ V L   +GK+ +++DN    + +EQI+  I
Sbjct: 4   ERDHAKSELEQFKVDIASAMKQMVSLDKALGKKEKSLDN--IRNQIEQIQSGI 54


>10_01_0109 + 1338525-1338590,1338744-1339325
          Length = 215

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 622 ESETVDNDGAXSDVEQIEESIPKSEPAXXGKELPAXXTNTGTP 750
           E++  +ND A  DV + E  +  + P+  G+E P+  +  G+P
Sbjct: 76  EADMHENDNALIDVHKDEIRVMLTAPSINGEEGPSHYSGKGSP 118


>03_04_0171 +
           18001993-18001995,18002527-18002640,18002958-18003127,
           18003408-18003684
          Length = 187

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 130 SRVVPV--IVSLFSVRHC-CYLLVRCCYPRRAVTLYCGXCR 17
           S V+PV  +V L   R C C LL R C   RA T+    CR
Sbjct: 105 SAVLPVRRLVCLIPTRRCRCLLLTRSCCLSRAPTVTSFPCR 145


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 232 LIAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAP 360
           L+ P  EP++++  A++   +P  V++  V + + ++ S+P P
Sbjct: 379 LVKPPMEPKEKEVAAKKMLKKPDKVQKNAVHSNIRSLVSTPCP 421


>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 316 EHVLRLKVWGRSVEHHYHDLLVQA*ERLSSLKTEELEA 203
           +HVLR +VW   + +H +D      E L+ +K  E EA
Sbjct: 381 DHVLRKEVWKFLLGYHEYDSTYAEREYLAVMKRTEYEA 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.305    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,844
Number of Sequences: 37544
Number of extensions: 273588
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)