Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1879
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical pr... 30 1.5
L14429-6|AAK93870.2| 342|Caenorhabditis elegans Temporarily ass... 29 2.7
Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.7
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 29 4.7
AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagella... 29 4.7
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 28 6.2
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 28 6.2
U67967-1|AAC47829.1| 413|Caenorhabditis elegans PTL-1B protein ... 28 8.1
U67966-1|AAB97090.1| 453|Caenorhabditis elegans PTL-1A protein ... 28 8.1
U38983-1|AAA80687.1| 436|Caenorhabditis elegans TAU-1b protein. 28 8.1
U38982-1|AAA80686.1| 431|Caenorhabditis elegans TAU-1a protein. 28 8.1
U00051-4|AAK70645.1| 453|Caenorhabditis elegans Protein with ta... 28 8.1
U00051-3|AAK70647.1| 413|Caenorhabditis elegans Protein with ta... 28 8.1
U00051-2|AAK70646.1| 458|Caenorhabditis elegans Protein with ta... 28 8.1
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 8.1
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 28 8.1
>Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical
protein F44G4.1 protein.
Length = 384
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 496 ERPPIQQKLVEKNALKSQLRTLQEQLAEMHEKY 594
+ PP ++K V K +K +L E+L E+ EKY
Sbjct: 47 DEPPKKKKKVVKKEIKQELELTDEKLQELLEKY 79
>L14429-6|AAK93870.2| 342|Caenorhabditis elegans Temporarily
assigned gene nameprotein 307 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTM 342
IA KPE +R ++ RS P DV R R ENI T+
Sbjct: 181 IAMKPELVERYTNPNRSWLGPRDVYRERTENIEVTV 216
>Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical
protein F59C6.7 protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 535 ALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEESI 684
++ S+ R + AE+ EKY V +ET+D D+EQ+++ I
Sbjct: 305 SMMSKFRRATDTRAELREKYKAASVGVSSRTETLDR--ISDDIEQLKQQI 352
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 526 EKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEE 678
EKNA + Q+R LQ+++ + E +L N+ K E N D++ EE
Sbjct: 983 EKNAKEHQIRALQDEMRQQDENISKL-NKERKNQEE-QNKKLTEDLQAAEE 1031
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 526 EKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEE 678
EKNA + Q+R LQ+++ + E +L N+ K E N D++ EE
Sbjct: 983 EKNAKEHQIRALQDEMRQQDENISKL-NKERKNQEE-QNKKLTEDLQAAEE 1031
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 526 EKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEE 678
EKNA + Q+R LQ+++ + E +L N+ K E N D++ EE
Sbjct: 983 EKNAKEHQIRALQDEMRQQDENISKL-NKERKNQEE-QNKKLTEDLQAAEE 1031
>AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagellar
transport proteinCHE-13 protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 535 ALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDNDGAXSDVEQIEESI 684
++ S+ R + AE+ EKY V +ET+D D+EQ+++ I
Sbjct: 305 SMMSKFRRATDTRAELREKYKAASVGVSSRTETLDR--ISDDIEQLKQQI 352
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 496 ERPPIQQKLVEKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDN 642
ER +++K E + S + L+E+LAE +K + N + + ++ V+N
Sbjct: 432 ERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 480
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 496 ERPPIQQKLVEKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDN 642
ER +++K E + S + L+E+LAE +K + N + + ++ V+N
Sbjct: 434 ERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 482
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 496 ERPPIQQKLVEKNALKSQLRTLQEQLAEMHEKYVQLCNRVGKESETVDN 642
ER +++K E + S + L+E+LAE +K + N + + ++ V+N
Sbjct: 434 ERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELKEHADLVEN 482
>U67967-1|AAC47829.1| 413|Caenorhabditis elegans PTL-1B protein
protein.
Length = 413
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 90 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 138
>U67966-1|AAB97090.1| 453|Caenorhabditis elegans PTL-1A protein
protein.
Length = 453
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 90 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 138
>U38983-1|AAA80687.1| 436|Caenorhabditis elegans TAU-1b protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 68 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 116
>U38982-1|AAA80686.1| 431|Caenorhabditis elegans TAU-1a protein.
Length = 431
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 68 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 116
>U00051-4|AAK70645.1| 453|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform a protein.
Length = 453
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 90 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 138
>U00051-3|AAK70647.1| 413|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform c protein.
Length = 413
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 90 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 138
>U00051-2|AAK70646.1| 458|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform b protein.
Length = 458
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 235 IAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNGCKK 390
+ P+PEPE P P V E +V S P Q+P+ +G K
Sbjct: 90 VEPEPEPEPVPEPEPEPEPEPEPVVEKEEEVVV---ESPPREQEPEKSGKSK 138
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 241 PKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMRSSPAPQQPQVNG 381
P PE ++ S+ RSSP +K+ ++ +S P+ V+G
Sbjct: 3105 PSPENQEATSETNRSSPILPRIKKPETGQLIKRSPTSDVPKPCVVSG 3151
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = +1
Query: 166 LSLENPGNSHXXXXXXXXXXENLIAPKPEPEDRDSDAQRSSPRPLDVKRARVENIVSTMR 345
L PGNS +AP+ PE+ + K V+ +V+T R
Sbjct: 210 LLTRKPGNSLSLMKLKTRITTTTMAPEEVPEEEVIPEEEEEITTTTRKTRPVKKVVNTFR 269
Query: 346 SSPAPQQPQVNGCK 387
P P P+V K
Sbjct: 270 QKPTP-APEVTTTK 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.305 0.125 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,853
Number of Sequences: 27780
Number of extensions: 231842
Number of successful extensions: 679
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
- SilkBase 1999-2023 -