Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1878
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    30   0.33 
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    27   4.1  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   5.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   5.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   7.2  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   7.2  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 270 TIQGHSFSSALCPPTMRSSS*TSYVLPYAVGPFFIPQAPL 151
           T+  HSF+S   PP + S+S  ++ LP AV P    QAPL
Sbjct: 235 TVGSHSFTSGTHPPIVSSNS--AFTLPNAVTP--AAQAPL 270


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 425 ETSHIERKIKRVVRHRGFDIRTLYNDIAILTLDQPVTFTKNIRPICLPSGGRAYAGLVAT 604
           ET+    K+  ++ HRG  +  + ND +  ++D      K    +C     R   GL+AT
Sbjct: 239 ETTENYHKVLGILMHRGAQVLRISNDFS--SIDASKRIFKEHESMCYGGDWRHTDGLLAT 296


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 789 PYXHCRNPY*LSSANHVIDYTAXSSGAVFKST 694
           P+ HC N   +  AN+++  T   +   +KST
Sbjct: 12  PFAHCYNKRVIFRANYLVPLTWLKNNVAYKST 43


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 785 IXTAGIHTSFPAQIM*STIPPGAAGXY--LSRHSEVSPNRKLILLEEQTAADHSLA 624
           I  +GI+ SF ++ + ST P   +     L + S VSPN +L+L+   +   HS++
Sbjct: 339 IHVSGIN-SFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVS 393


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 517 CQDRNVVVQCANVKTSMPDNSFNFSF 440
           C++ N +V C N  TS+  N +   F
Sbjct: 205 CENSNAIVFCDNCNTSVHQNCYGIPF 230


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 421 VGSNVVVTQSGSETSDVPGSHMSY----AMCCRYHVFVVNDRSSAKLTPSIKQSY 269
           +G+ +V ++  +E    PG H S      + CR   F VN+  S+K+  ++++ +
Sbjct: 302 IGATIVSSKIAAEIH--PGEHGSTFGGNPVACRVGTFCVNELGSSKILQNVRKQH 354


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = -2

Query: 427 FGVGSNVVVTQSGSETSDVPGSHMSYAMCCRYHVFVVNDRSSAKLTPSI 281
           FGVGSN+  T +            ++   C   V++    S   + P++
Sbjct: 326 FGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,925
Number of Sequences: 5004
Number of extensions: 67437
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)