Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1878
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0219 - 19433053-19433110,19433243-19433547                       31   1.4  
03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826     29   3.3  
09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555     29   4.3  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   5.7  
07_01_0975 + 8223269-8224354                                           29   5.7  
12_01_0085 - 689489-689935                                             28   9.9  

>01_05_0219 - 19433053-19433110,19433243-19433547
          Length = 120

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 110 AFPTQPSKPSQP-AVSGACGMKNGPTAYGSTYDVQDEERIVGGHNAELNEWPWIVAL 277
           A   QP   + P A SG  G  NGP A G    +       GG    + +W WI  L
Sbjct: 50  ALVRQPGGGALPFASSGGGGGDNGPAAGGGDGGILGSSSGAGGALLSIRQWRWIWVL 106


>03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826
          Length = 245

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 179 PTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGGSIIDDKHVISAAHCVAH 358
           P    S +  ++EE ++  H A  N W  I  LF  GR     ++ +  HVI A  C   
Sbjct: 52  PRINRSPFTEEEEELLLASHRAHGNRWAVIARLF-PGR--TDNAVKNHWHVIMARRCRER 108

Query: 359 M 361
           M
Sbjct: 109 M 109


>09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555
          Length = 530

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 179 PTAYGSTYDVQDEERIVGGHNAELNEWPWIVALFNAGRQFCGGSIIDDKHVISAAHCVAH 358
           P A+GS  + + E  + GG   +     + +  F AGR+ C G       +  A   + H
Sbjct: 429 PAAWGSPEEFRPERFLAGGPAVDFRGNDYQLVPFGAGRRICPGISFAVPVLEMALVALLH 488

Query: 359 MTSWDV 376
              W++
Sbjct: 489 HFDWEL 494


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = -2

Query: 322 VVNDRSSAKLTPSIKQSYDPGPFV*LCVMSTNNALFILNIVC--ATVCRWSILHTASAAD 149
           +++  +S +LT     S++      L + +   AL + N VC  AT+C  +I+H  +  D
Sbjct: 335 ILSGETSIQLTLQFLYSHNRSDL--LILKTIKQALEMRNSVCHSATICSNAIMHAGTTVD 392

Query: 148 CRLR----WLAR 125
             LR    WL+R
Sbjct: 393 TFLRENLEWLSR 404


>07_01_0975 + 8223269-8224354
          Length = 361

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 128 SKPSQ-PAVSGACGMKNGPTAYGST 199
           S P++ P+ SGA G   GP++YGST
Sbjct: 309 SGPAEGPSPSGAAGPAEGPSSYGST 333


>12_01_0085 - 689489-689935
          Length = 148

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 176 HSSYRKRR*LQAEMACSAALGMLE 105
           H+ +R+RR   +EM CS  LG LE
Sbjct: 59  HAHHRRRRDESSEMECSICLGELE 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,406,823
Number of Sequences: 37544
Number of extensions: 518484
Number of successful extensions: 1661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)