Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1878
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    73   2e-13
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    64   8e-11
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    46   4e-05
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    34   0.10 
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    34   0.14 
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    33   0.24 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.42 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    32   0.55 
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68161-3|CAD89736.1|  308|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
 Frame = +2

Query: 215 EERIVGGHNAELNEWPWIVALFNA-GRQFCGGSIIDDKHVISAAHCVA---HMTSWDVAR 382
           + R++GG  +  + WPW V L +  G   CGGS+ID   V++AAHC A     TS+ V  
Sbjct: 55  DHRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSV-- 112

Query: 383 LTARLGDYNIRTNTETSHIERKIKRVVRHRGFDIRTLYN-DIAILTLDQPVTFTKNIRPI 559
              R+G +  R+ + + H   ++  V  H  ++I    + D AI+ +  PV  +   RPI
Sbjct: 113 ---RVGGH--RSGSGSPH---RVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPI 164

Query: 560 CLPSGGRAYAGLVATVIGWGSLRE-SGPQPSVLQEVSI 670
           CLPS   A    +  V GWGS  E S      L+E+ +
Sbjct: 165 CLPS-LPAVENRLCVVTGWGSTIEGSSLSAPTLREIHV 201


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
 Frame = +2

Query: 221 RIVGGHNAELNEWPWIVALFNAGRQ--FCGGSIIDDKHVISAAHCVAHMTSWDVARLTAR 394
           R+VGG       +PW  AL N   +   CG SI+D  H+I+AAHC        V+     
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEE--DERVSSYEVV 83

Query: 395 LGDYNIRTNTETSHIERKIKRVVRHRGFDI-RTLY-NDIAILTLDQP-VTFTKNIRPICL 565
           +GD++   N +T   E +I  + R   + + + ++ +DIAIL +  P + F +  +PICL
Sbjct: 84  VGDWD---NNQTDGNE-QIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 566 PSGGRAYA-GLVATVIGWGSL 625
           PS    Y  G    V GWGS+
Sbjct: 140 PSKDFVYTPGRQCVVSGWGSM 160


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
 Frame = +2

Query: 221 RIVGGHNAELNEWPWIVALFNAGRQ----FCGGSIIDDKHVISAAHCVAHMTSWDVARLT 388
           RI+GG++ + +   W+  L + G       CG ++IDD  +++AAHC   + +     + 
Sbjct: 37  RIIGGNSID-DGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVYVR 95

Query: 389 ARLGDYNIRTNTETSHIERKIKRVVRHRGFDIRTLYNDIAILTLDQPVTFTKNIRPICL 565
                   + N E S     +K    H G++ +T  NDIA+L +   ++    I+P+CL
Sbjct: 96  ------EPKNNRERSF---SVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPVCL 144


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 497 NDIAILTLDQPVTFTKNIRPICLPSGGRAYAGLVATVIGWGSL-RESGP 640
           +D AI+ +++ + F++N+RPICLP     Y   +A V GWG +  ESGP
Sbjct: 143 HDWAIVEVEKRIHFSENVRPICLPRPNMYYTKSLA-VPGWGRIFNESGP 190



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 242 AELNEWPWIVALFNAGRQFCGGSIIDDKHVISAAH 346
           +++  +PW V+    G    GGSII   H+I+AAH
Sbjct: 23  SKIKNFPWAVSFTVDGVNRLGGSIISPYHIITAAH 57


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +2

Query: 485 RTLYNDIAILTLDQPVTFTKNIRPICLPS 571
           R  +NDIA+  L++P+ F+K+I P CLPS
Sbjct: 117 RESFNDIAVFELEEPIEFSKDIFPACLPS 145


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +2

Query: 371 DVARLTARLGDYNIRTNTETSHIERKIKRVVRHRGFDIRTLYNDIAILTLDQPVTFTKNI 550
           D+ R  A   D  +    ++ H +  +K V    G      +N +A++ L +PV   +N 
Sbjct: 130 DLVRSVAVFLDL-LSVERQSGHEQLDVKSVRILNGCVKSFQFNRVAVIELKKPVHKGQNA 188

Query: 551 RPICLPSGGRAYAG 592
           RPIC  S  R Y G
Sbjct: 189 RPICFGSDFRIYTG 202


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
 Frame = +2

Query: 215 EERIVGGHNAELNEWPWIVALFN---------AGRQFCGGSIIDDKHVISAAHCVAHMT 364
           + +I  G  AE++E PW V +              + C G++   +H+++A HC A  T
Sbjct: 38  KSKIFNGRKAEIDEAPWAVRINTYTNVKNIDETWSKHCSGTLTSPRHILTATHCAATYT 96


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +2

Query: 221 RIVGGHNAELNEWPWIVA--LFNAGRQF---CGGSIIDDKHVISAAHCVA 355
           ++  G +A  +E PW V   L++   Q    C G+I+  +H++ A HC A
Sbjct: 162 KVYNGRDASQSEAPWSVFTYLYSKDEQSATTCTGTIVSPRHILIATHCFA 211


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +2

Query: 260 PWIVALFNAGRQ-----FCGGSIIDDKHVISAAHC 349
           PW V +    R+      CGG++I  KHV++AAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 299 CGGSIIDDKHVISAAHCVAHMTSWDV-ARLTARLGDYNIRTNTETSHIERKIKRVVRHRG 475
           CGG +I    VI++AHCV     + V A++T  LGD ++  + +     R     +  + 
Sbjct: 46  CGGVLIAPSIVITSAHCVFSGDDFAVTAKVT--LGDVHLNKHDDGEQEFRSHAMAISKKF 103

Query: 476 F-DIRTLYNDIAILTLDQ 526
           F D     +D+A++ L Q
Sbjct: 104 FNDASEANDDVAVIFLPQ 121


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 377  ARLTARLGDYNIRTNTETSHIERKIKRVVRHRGFDIRTLYN 499
            A +T +  DYNI TN+   + ++ I RV+R R   ++  Y+
Sbjct: 1389 AEVTFKKTDYNI-TNSVNKYCDKAIPRVIRSRHNSMKLTYS 1428


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 377  ARLTARLGDYNIRTNTETSHIERKIKRVVRHRGFDIRTLYN 499
            A +T +  DYNI TN+   + ++ I RV+R R   ++  Y+
Sbjct: 1389 AEVTFKKTDYNI-TNSVNKYCDKAIPRVIRSRHNSMKLTYS 1428


>Z68161-3|CAD89736.1|  308|Caenorhabditis elegans Hypothetical
           protein F20C5.7 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 454 FNFSFDVRCFGVGSNVVVTQSGSETSDVPGSHMSY 350
           FN   D+RC+ +     +TQ  S+T  V   HM Y
Sbjct: 168 FNCKLDLRCYLIQIWTQLTQIHSKTKKVDEDHMKY 202


>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 257 IRLALRYVHQQCALHLEHRMCYRMPLVHSSYRKR 156
           I L++  +HQ C L++ H+  +   + H  ++KR
Sbjct: 200 ITLSVEKLHQLCNLNINHQESHLQDVTHPIFKKR 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,006
Number of Sequences: 27780
Number of extensions: 419844
Number of successful extensions: 1240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)