Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1877
(592 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 269 4e-72
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 269 4e-72
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 269 4e-72
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 269 4e-72
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 269 4e-72
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 269 4e-72
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 93 5e-19
BC125176-1|AAI25177.1| 577|Homo sapiens ACSM2A protein protein. 32 1.3
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 32 1.7
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 2.3
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 2.3
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 2.3
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 2.3
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 31 3.0
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 31 3.0
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 31 3.0
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 31 3.0
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 31 3.0
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 31 3.0
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 31 3.0
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 31 3.0
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 31 3.0
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 31 3.0
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 4.0
DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short for... 30 5.3
DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short for... 30 5.3
DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short for... 30 5.3
DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short for... 30 5.3
DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short for... 30 5.3
DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short for... 30 5.3
BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein pr... 30 5.3
BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein. 30 5.3
BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 doma... 30 5.3
BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein. 30 5.3
AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear ribonucle... 30 5.3
AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isofo... 30 5.3
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor... 30 5.3
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p... 30 5.3
AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form ... 30 5.3
BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat tra... 30 7.0
BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat tra... 30 7.0
AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat tra... 30 7.0
AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein. 30 7.0
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 24 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 83
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 84 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 143
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 144 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 22 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 81
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 82 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 141
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 142 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 189
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 24 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 83
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 84 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 143
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 144 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 24 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 83
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 84 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 143
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 144 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 24 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 83
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 84 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 143
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 144 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 269 bits (660), Expect = 4e-72
Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVREL 201
SQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+VP+P+LK+FQKIQ+RLVREL
Sbjct: 24 SQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVREL 83
Query: 202 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILEDLVFP+EIVGKR
Sbjct: 84 EKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR 143
Query: 382 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 525
IRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 144 IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/52 (84%), Positives = 49/52 (94%)
Frame = +1
Query: 307 SRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKV 462
SRTLT+V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 61
>BC125176-1|AAI25177.1| 577|Homo sapiens ACSM2A protein protein.
Length = 577
Score = 32.3 bits (70), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 479 TDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKS 345
T W ++ LCS++ W L CT + P L+ L T+S+ KS
Sbjct: 263 TGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 307
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 31.9 bits (69), Expect = 1.7
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 192
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 193 RELEKKFSGK 222
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 192
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 193 RELEKKFSGK 222
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 192
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 193 RELEKKFSGK 222
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 192
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 193 RELEKKFSGK 222
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 31.1 bits (67), Expect = 3.0
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +1
Query: 61 LKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 240
L + + + +EL +K + + V MPK K + K+ + +R +KK G +
Sbjct: 733 LSVSTQHILVPMHFNLEL-SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI-- 789
Query: 241 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 360
+ +PKP T V+ K + +T TS+ + + + P
Sbjct: 790 --ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIP 827
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 4.0
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +1
Query: 34 LVELETNSDLKAQLREL-YITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVREL 201
LVEL + D A L+ L Y++ + + + K + +IY VP ++ FQK++++ +E
Sbjct: 100 LVELG-DLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
Query: 202 EKKFSGK 222
EK F GK
Sbjct: 159 EKMFKGK 165
>DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short form
variant 5 protein.
Length = 1215
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short form
variant 2 protein.
Length = 1178
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 552 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 608
>DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short form
variant 7 protein.
Length = 1149
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short form
variant 6 protein.
Length = 1144
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short form
transcript variant 8 protein.
Length = 1020
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short form
protein.
Length = 1076
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 587 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 643
>BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein
protein.
Length = 627
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 444 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 500
>BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.
Length = 1144
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 domain
protein) protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.
Length = 1716
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 192
+ +LVEL + D A L+ L + NKK +YV P ++ FQ+++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKER 155
Query: 193 RELEKKFSGK 222
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isoform
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 37 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 210
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat
transmembrane neuronal 2 protein protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein.
Length = 529
Score = 29.9 bits (64), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 98 SQLTWLHLDHNQISTV--KEDAFQGLYK 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,465,047
Number of Sequences: 237096
Number of extensions: 1657327
Number of successful extensions: 3249
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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