Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1875
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 31 1.1
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 31 1.4
08_02_0885 + 22268287-22268988 31 1.4
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 31 1.4
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 29 3.3
11_06_0610 - 25449085-25453284 29 4.3
11_02_0037 - 7613632-7613727,7614452-7615507 29 4.3
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 4.3
01_06_1431 + 37317248-37317907 29 5.7
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 28 7.5
01_01_0755 - 5827893-5829764 28 7.5
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 28 7.5
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 28 7.5
11_06_0690 + 26303733-26306540 28 9.9
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 28 9.9
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 28 9.9
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 28 9.9
07_01_0297 - 2156960-2157736 28 9.9
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 28 9.9
05_03_0458 + 14280953-14281866,14281964-14282912 28 9.9
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 28 9.9
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 28 9.9
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 55 GKRVR*R--VPSGPQLSTGASARTLPSPAARCIPPPRLRTG-LRGNIA 189
G+R R R + PQ + G+ A L + R PPPRLRT L G +A
Sbjct: 156 GRRSRPRRCLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRLAGAVA 203
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 100 TGASARTLPSPAARCIPPPRLRTGLRGNI---AAQDPVIVHGHV-AFXTS 237
T A PSP PPP G+ G + A P +V G+V +F TS
Sbjct: 285 TAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTS 334
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 12 LTMTSGYLMERSALRKASSVTR--TVWPAAVHRCKRPNTPITSCTMHPSPPP 161
LTMT +M KA+ + T PA RC+RP+ +C M PP
Sbjct: 31 LTMTHNCVMYLKNKEKAAGSVKGKTAIPATPRRCRRPDGSNPACKMRWERPP 82
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 87 PAAVHRCKRPNTPITSC-TMHPSPPPANRSSGEYR 188
P HRC P+ +C T P+PP SS E R
Sbjct: 328 PRLTHRCSTTTQPLPTCGTPAPAPPAGQPSSAEDR 362
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 138 TMHPSPPPANRSSGEYRRSGPCHCS---WT 218
T PPP NR +R S PC C+ WT
Sbjct: 127 TSDRQPPPMNRRMRHHRASAPCPCADVLWT 156
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 79 PSGPQLSTGASARTLPSPAARCIPPPRLR 165
PS P+ S+ + ++LP PA +PPP ++
Sbjct: 1106 PSVPKASSPPTEKSLPPPATVSLPPPTVK 1134
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 11 PYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAPE-HSHHQLHDASLP 154
P+ + G + +G AY AR+ P P H HH H +P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 105 CKRPNTPITSCTMHPSPPPA 164
CK PI+ CT P+PPPA
Sbjct: 104 CKVQAPPISQCTAVPTPPPA 123
>01_06_1431 + 37317248-37317907
Length = 219
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 73 RVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 207
R P P S+ +++ T SPAA PPRL + AA P I
Sbjct: 90 RSPFSPPPSSSSNSSTTASPAAAAAAPPRLIPTIPRPAAALAPHI 134
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 542 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 444
CV+ CQ + R++PR P L W+Q++ G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595
>01_01_0755 - 5827893-5829764
Length = 623
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -3
Query: 393 SLGLSASVHLTHTFGSTAGRRPVSARAAIP 304
S+G +++ L+++FG+T GR PV+A A P
Sbjct: 77 SVGPCSTLLLSNSFGATYGRPPVTAAYAPP 106
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 393 SLGLSASVHLTHTFGSTAGRRPVSARAAIP 304
S+G +++ L+H+FG T GR PV+ A P
Sbjct: 66 SVGPCSTLLLSHSFGYTYGRGPVTVAYAPP 95
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Frame = +3
Query: 45 SALRKASSVTRTVWP-AAVHRCK-----RPNTPI-------TSCTMHPSPPPANRS 173
SA AS+ + + P AA H C+ RP +P+ + +MHPSPPP S
Sbjct: 7 SAPSHASAASSSPLPFAAAHPCRASWTPRPTSPLPPLSLLRATASMHPSPPPEGHS 62
>11_06_0690 + 26303733-26306540
Length = 935
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 88 PQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVIVH 213
P L T + + S A PPP LR L G + P+IV+
Sbjct: 707 PNLCTLDPEKEVESEAGIFEPPPALRAQLSGPVQCGSPLIVY 748
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 110 APEHSHHQLHDAS-LPPACEQVFGGISP 190
A H HHQ+ A L P +Q FGG SP
Sbjct: 375 AEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -3
Query: 369 HLTHTFGSTAGRRPVSARAAIPRPKSQASCKSLAASVPVTA*IHACXKGDMSMNNDRVLS 190
HL G+ A R +ARAAIP P+ + HA + M++DR +
Sbjct: 229 HLLRGGGAGARDRKATARAAIPAPRRDGAA------------AHAPRRLHQMMHDDRAAA 276
Query: 189 GDIPPKTCSQAGGR 148
P + GGR
Sbjct: 277 APQPSSSSGDGGGR 290
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 305 GMAALALTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNKQAD 439
G+AA A G + V+ VCV T A +P+ I + +F + ++ D
Sbjct: 5 GLAADARCGAIDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKD 49
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 379 CISTLDAYVRKYGREKAGQRQSCHSSS*ITSFV----QIFSGVCAGDGV 245
C DA + YG EK GQR C + + + + V AG GV
Sbjct: 149 CDDDDDAILPDYGEEKEGQRTMCFGENAVRKIAVCSPDLVAAVIAGSGV 197
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 424 GNFEFIAISDVPRLICISTLDAYVRKYGREKAGQR 320
G+++ I IS + +ICISTL +++ EK QR
Sbjct: 339 GSYDCICISIIFLIICISTLLIKIQRMKLEKEKQR 373
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 PNTPIT-SCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSXKRVFTPSPAQTPLK 275
P P T SC+ HP+PPP + S S + P+ AQTP +
Sbjct: 77 PLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTR 131
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 437 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 550
D I+ + TT+++ +D+ LVSH IDS+ SK TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 672 PPSRLGMNPSTNTRTKSSVSSTTWKIHMXXTTS 770
PPS LG++PS N + +SS+ + TTS
Sbjct: 384 PPSSLGLSPSVNGVNRGILSSSVEVLSSAMTTS 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,826,953
Number of Sequences: 37544
Number of extensions: 537567
Number of successful extensions: 2193
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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