Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1874
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    33   0.043
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.94 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.2  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.9  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.9  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   3.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.8  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   5.0  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 267 PGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGG 136
           PG PA P+ P  PG    PG PG  +     +  +P     P G
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNG 583



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 200 PGQPGDVGLPGFDGRDGVAGIPGSF 274
           PG P    +PG  G     G PGS+
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSY 564



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 285 PFRPKDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIP 151
           PF P  P +PA P  P     P +PG        +  +P   S+P
Sbjct: 538 PF-PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  YNGLKGEKGTIGETGRIGIYGEQ---GLVGVKGETGDEGEAGFIGPPGLQGIEGDKGDTL 181
           YN       T G +   G YG     G  G     G  G +   G  G     GD G ++
Sbjct: 48  YNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYSI 107

Query: 182 LP 187
            P
Sbjct: 108 TP 109


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 20  LKGEKGTIGETGRIGIYGEQGLVGVKGETGDEG 118
           +K  +GT+ +TG  G+ G +G V ++ +  D G
Sbjct: 660 IKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTG 692


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 35  GTIGETGRIGIYGEQGLVGVKGETGDEGEAGFIGPPGLQGIEGDK 169
           G  GE G + +    G++ +  ET  EG+ G +  PG +    D+
Sbjct: 313 GRNGEPGEVLV--NAGVIAMSRETSPEGDFGIVITPGFESFYVDR 355


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 267 PGIPATPSRPSNPGNPTSPGCPGKISD--GSRVSPLSPSIP 151
           P  PATPS+P  P    S    G  S    S  SP SPS P
Sbjct: 273 PPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSP 313


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 638 YLFCNLNNVC-----DFAQREDYSFWLS 706
           +L C+L   C     DF+ R D+SFW+S
Sbjct: 516 FLLCSLVEQCFGVFNDFSHRFDFSFWIS 543


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 369 SKVNEGLKVSLDCMAASVVPVHQHLH 446
           SKVN+GL    D    S  PV QH H
Sbjct: 287 SKVNQGLIKMYDVEVLSKYPVVQHFH 312


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 313 SPLPFDTQVTISTKRPWDSCYTIPSIKSWQSN 218
           SPLPF+ +V ++ +  WD C+ +  + S   N
Sbjct: 330 SPLPFEIRVQLTRRLFWD-CFMLDRLNSLYCN 360


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -2

Query: 683 LVGQSRKHYLDCKTNTALXRIYGDNYLERRDLDRELFH*RLYELTKSLPKAVMFQMDISV 504
           L G S +H ++C + +     Y D      D +R  F    Y+L   L +    Q+   +
Sbjct: 48  LCGLSCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQ---YKLNPFLLRKHRSQLTKLL 104

Query: 503 SILFVNEP 480
           S++F + P
Sbjct: 105 SVVFKHYP 112


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 258  PATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPG 139
            P+ P R  + G+ +S      I D +   PL  S P  PG
Sbjct: 1398 PSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQPTNPG 1437


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 205 TTW*CWIARI*WTGWC 252
           T W C  A I W GWC
Sbjct: 502 TEWGCMQALIDWNGWC 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,608
Number of Sequences: 5004
Number of extensions: 58058
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)