Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1872
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 352 1e-97
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 352 1e-97
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 290 7e-79
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 117 1e-26
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 117 1e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 117 1e-26
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 70 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 59 4e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 59 4e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 59 4e-09
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 54 2e-07
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 54 2e-07
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 41 9e-04
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 38 0.008
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 37 0.015
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.045
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.73
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 31 1.3
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.9
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.9
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.9
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.9
U97403-1|AAB52468.1| 237|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine re... 29 3.9
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 5.1
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 352 bits (866), Expect = 1e-97
Identities = 163/200 (81%), Positives = 178/200 (89%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 181 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALD 360
VS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Query: 361 AILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 540
+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVE
Sbjct: 234 SIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVE 293
Query: 541 MHHEALQEAVPGDNVGFNVK 600
MHHE+L EAVPGDNVGFNVK
Sbjct: 294 MHHESLPEAVPGDNVGFNVK 313
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 711 PGQISNGYXPVLDCHTGHIGCNLQK-XXKVD 800
PGQISNGY PVLDCHT HI C + KVD
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 599 KNVSVKELRRGYVAGDSQNNPPKGAADFTAQVIXLNH 709
KNVSVK++RRG V DS+ +P K A F AQVI +NH
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 352 bits (866), Expect = 1e-97
Identities = 163/200 (81%), Positives = 178/200 (89%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 181 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALD 360
VS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Query: 361 AILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 540
+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVE
Sbjct: 234 SIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVE 293
Query: 541 MHHEALQEAVPGDNVGFNVK 600
MHHE+L EAVPGDNVGFNVK
Sbjct: 294 MHHESLPEAVPGDNVGFNVK 313
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 711 PGQISNGYXPVLDCHTGHIGCNLQK-XXKVD 800
PGQISNGY PVLDCHT HI C + KVD
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 599 KNVSVKELRRGYVAGDSQNNPPKGAADFTAQVIXLNH 709
KNVSVK++RRG V DS+ +P K A F AQVI +NH
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 290 bits (712), Expect = 7e-79
Identities = 131/166 (78%), Positives = 146/166 (87%)
Frame = +1
Query: 103 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 282
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 283 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 462
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 463 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 600
ETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVK
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVK 279
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 711 PGQISNGYXPVLDCHTGHIGCNLQK-XXKVD 800
PGQISNGY PVLDCHT HI C + KVD
Sbjct: 316 PGQISNGYTPVLDCHTAHIACKFNELKEKVD 346
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 599 KNVSVKELRRGYVAGDSQNNPPKGAADFTAQVIXLNH 709
KNVSVK++RRG V DS+ +P K A F AQVI +NH
Sbjct: 279 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 315
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 117 bits (281), Expect = 1e-26
Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 2/202 (0%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +
Sbjct: 216 LVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGK 275
Query: 181 VSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 357
++ +++K+G+NP + +VP SG G + + T W G C IE +
Sbjct: 276 LTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFI 325
Query: 358 DAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 534
D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P +V
Sbjct: 326 DVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQ 383
Query: 535 VEMHHEALQEAVPGDNVGFNVK 600
+ + V GDN+ F +K
Sbjct: 384 IWADDVETERVVAGDNIKFKLK 405
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 117 bits (281), Expect = 1e-26
Identities = 67/196 (34%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 277 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 334
Query: 181 VSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 357
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+E +
Sbjct: 335 LSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELI 379
Query: 358 DAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV 537
D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 380 DSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKE 438
Query: 538 EMHHEALQEAVPGDNV 585
+++ + GD +
Sbjct: 439 CANNDGSRHCFAGDYI 454
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 117 bits (281), Expect = 1e-26
Identities = 67/196 (34%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 295 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 352
Query: 181 VSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEAL 357
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+E +
Sbjct: 353 LSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELI 397
Query: 358 DAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV 537
D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 398 DSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKE 456
Query: 538 EMHHEALQEAVPGDNV 585
+++ + GD +
Sbjct: 457 CANNDGSRHCFAGDYI 472
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/59 (64%), Positives = 43/59 (72%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 177
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 60.9 bits (141), Expect = 1e-09
Identities = 40/100 (40%), Positives = 48/100 (48%)
Frame = +2
Query: 167 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 346
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 347 LKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELK 466
+L PS H A LT VF + T+S L P S L+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 58.8 bits (136), Expect = 4e-09
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Frame = +1
Query: 55 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVA 228
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY P
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 207
Query: 229 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA--ILPPARPTDKPLR 402
P+ G + K P + G+ K L+E LD ++P + ++P+
Sbjct: 208 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 253
Query: 403 LPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV----EMHHEALQEA 567
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A
Sbjct: 254 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 313
Query: 568 VPGDNVG 588
PGD +G
Sbjct: 314 EPGDQLG 320
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 58.8 bits (136), Expect = 4e-09
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Frame = +1
Query: 55 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVA 228
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 229 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA--ILPPARPTDKPLR 402
P+ G + K P + G+ K L+E LD ++P + ++P+
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 254
Query: 403 LPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV----EMHHEALQEA 567
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A
Sbjct: 255 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 314
Query: 568 VPGDNVG 588
PGD +G
Sbjct: 315 EPGDQLG 321
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 58.8 bits (136), Expect = 4e-09
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Frame = +1
Query: 55 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVA 228
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 229 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA--ILPPARPTDKPLR 402
P+ G + K P + G+ K L+E LD ++P + ++P+
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 254
Query: 403 LPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV----EMHHEALQEA 567
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A
Sbjct: 255 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 314
Query: 568 VPGDNVG 588
PGD +G
Sbjct: 315 EPGDQLG 321
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 53.6 bits (123), Expect = 2e-07
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 5/201 (2%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 181 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC---LIE 351
+ G+N GD P +G + EG+ D C LI+
Sbjct: 186 ARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DISCIERLID 224
Query: 352 ALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITTE 525
ALD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTT 284
Query: 526 VKSVEMHHEALQEAVPGDNVG 588
+++ ++++E GD+ G
Sbjct: 285 ASDIQVFGKSVKEVRAGDHCG 305
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 53.6 bits (123), Expect = 2e-07
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 5/201 (2%)
Frame = +1
Query: 1 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 180
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 181 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC---LIE 351
+ G+N GD P +G + EG+ D C LI+
Sbjct: 186 ARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-DISCIERLID 224
Query: 352 ALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITTE 525
ALD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 225 ALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTT 284
Query: 526 VKSVEMHHEALQEAVPGDNVG 588
+++ ++++E GD+ G
Sbjct: 285 ASDIQVFGKSVKEVRAGDHCG 305
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 41.1 bits (92), Expect = 9e-04
Identities = 49/181 (27%), Positives = 76/181 (41%)
Frame = +1
Query: 55 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 234
QT EH LLA ++I+ +NK D E + + E K+V +K +G + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163
Query: 235 PISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQ 414
PI +E S +FK +E + K IE+ I P R + + +
Sbjct: 164 PI--------VEMSLADGYFK------EEMLQNLKLAIES--RIFEPKRDEEGEFLIAID 207
Query: 415 DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 594
+ I G GTV G V GVL+ T + F N VK++E + + + G F
Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFL 267
Query: 595 V 597
V
Sbjct: 268 V 268
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 37.9 bits (84), Expect = 0.008
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Frame = +1
Query: 52 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 231
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 232 VPISGWHGDNMLEPSTKM-PWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK--PLR 402
+ N PS K+ P F QV EG L+ ++P R ++ P
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIF---QVSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375
Query: 403 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 513
+ D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.1 bits (82), Expect = 0.015
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Frame = +1
Query: 52 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 231
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 232 VPISGWHGDNMLEPSTKMPWFKG---WQVERKEGKADGKCLIEALDAILPPARPTDK--P 396
PI + D+++ + P K +QV EG L+ I+P R ++ P
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGT--NLPLLRQFLNIVPLRRQLNENDP 372
Query: 397 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 513
+ D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 373 AHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.045
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 364 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 543
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 544 HHEALQEAVPGDNVGFNV 597
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 122 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATM 3
LF PT+SC+ + AS S P + PA N VP AT+
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATL 51
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 478 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKERVR 612
KPGTI F P ITTE K H L+ + GD ++ R
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRSAFR 400
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 185 PHTSRRLATTQLLSLSCPFLD 247
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 185 PHTSRRLATTQLLSLSCPFLD 247
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 185 PHTSRRLATTQLLSLSCPFLD 247
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 185 PHTSRRLATTQLLSLSCPFLD 247
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>U97403-1|AAB52468.1| 237|Caenorhabditis elegans Hypothetical
protein T10E9.5 protein.
Length = 237
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 679 ICSTLRWVVLGVTSNIPTTQFLDGHVLLR*NLHCLQVQL 563
I + +W+++G+T+ + + Q L G +LL+ N+ +V L
Sbjct: 41 ISNRRKWIIVGLTTIVISIQLLLGVILLKKNVQGFEVNL 79
>AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine
receptor, class v protein4 protein.
Length = 321
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 675 AAPLGGLFWESPATYPRRNSLTDTFFYVETYIVSRYSFLESFVVHL 538
AAP GGLF + + + + L D + ++VS + +L +F VHL
Sbjct: 163 AAPSGGLFLRASPEFIKLDVLQDLTLSIFCFLVSSFLYLITF-VHL 207
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 557 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 378
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 377 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 258
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 557 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 378
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 377 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 258
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 602 SFTLKPTLSPG-TASWRASWCISTDLTSVVMLAGAKTTMVPGFN--TPVSTLPTGTVPIP 432
+FT +S + S R S +S D T V + + VP + VST PT +P
Sbjct: 37 TFTQSSAVSESQSTSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLP 96
Query: 431 PILY 420
PI Y
Sbjct: 97 PITY 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,818
Number of Sequences: 27780
Number of extensions: 463415
Number of successful extensions: 1480
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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