Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1869
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 27 3.1
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 3.1
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 27 4.1
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 5.4
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 7.2
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 7.2
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.5
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 427 PPLYEVELTASDEDEDTSVLELVIPMQ 507
P LY++ T S + ED S ELV P++
Sbjct: 7 PRLYDMSPTESKKQEDVSETELVYPVE 33
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 280 KHCDEELAKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPV-------NKESPERASPPLY 438
K +EE++ + + DE D+ P P+ +DHL + KE L
Sbjct: 4049 KEDEEEMSDDVGI--DDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLE 4106
Query: 439 EVELTASDEDEDTSVLELVIPMQ 507
++++ A+DE+++ + E PMQ
Sbjct: 4107 DMDMEAADENKEEADAEKDEPMQ 4129
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 406 ESPERASPPLYEVELTASDEDEDTSVLELVIPMQSSR 516
ESP R+ P Y ++ ED T V E V+P ++ R
Sbjct: 285 ESPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPFEAFR 321
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 41 YNLILFGLCPRHKKESSWRPKRKIMGCCSPCSRNPRT 151
Y+ ++ GLC K + RP+ + C P P+T
Sbjct: 98 YSTMVCGLCVSLLKNAVGRPRPDFLARCQPFESTPKT 134
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 4 IYVSLITKLSTQI--QFDIVRLVP*TQKGVKLAAEEEDHGLLLPLFTEPEDSGID 162
++VS+ T L + + I RLV GV L + +E L PLF E E ID
Sbjct: 130 VFVSVATNLKKKCVPEKGIARLVIEKPFGVDLKSAQELQSQLAPLFDEKEIYRID 184
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 84 SQAGGRRGRSWAVAPLVHGTRG 149
S GGR GR W + P + GT+G
Sbjct: 123 SYHGGRNGRMWTLDP-IDGTKG 143
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 264 PPGYGLFIISAA*FALLCVFLQTIP 190
P GYG F+ +A +LL +F+ IP
Sbjct: 176 PDGYGAFLATACVCSLLEIFMSFIP 200
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 186 CVSTCVVAVNATVLGFREQGEQQPMIFLFGRQLDSFLCLGHKPNNIKL 43
CV TC V V F+ Q E F R +D + +G+ N +
Sbjct: 340 CVDTCSQIVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDI 387
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 77 CV*GTSRTISNCICVDNLVIRD 12
CV G +SN I +DN+V+ D
Sbjct: 393 CVIGKGVVVSNSILMDNIVVED 414
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 10 VSLITKLSTQIQFDIVRLVP*TQKGVKLAAEEEDHGLLLPLFTEPEDSG 156
VSL+ K T +Q ++P + + A EEE L+ +F E + G
Sbjct: 1025 VSLLDKNGTLLQLPYDTVLPYARNVARNAVEEEKTYLISDVFREAKGGG 1073
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,517
Number of Sequences: 5004
Number of extensions: 53921
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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