Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1869
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 1.4
12_02_0132 - 14054331-14054969 29 5.7
11_06_0620 + 25585060-25585283,25585355-25585538 28 7.5
11_06_0610 - 25449085-25453284 28 7.5
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 28 7.5
05_01_0187 + 1349725-1352238 28 7.5
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332... 28 7.5
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 7.5
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 28 7.5
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 28 7.5
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 28 9.9
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 331 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQ 507
ED+ +D+ P VP+ H+ VN ++P L EV L +EDE+ E ++ Q
Sbjct: 222 EDNTSVDVGALPEVPQITWHIEVNGADQPPSTPKLSEVVL-KRNEDENGKTEETLVAEQ 279
>12_02_0132 - 14054331-14054969
Length = 212
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 252 GLFIISAA*FALLCVFLQTIPRCVSTCVVAVNATVLGFREQGEQQPMIFLFGRQL 88
GLF+ ++ A + + C+ TC+ NA EQ +Q P++ L G+ L
Sbjct: 48 GLFMFASHVLAAVAAAVLFAAMCLYTCLCLNNAAPEEEEEQQQQPPVLLLPGQAL 102
>11_06_0620 + 25585060-25585283,25585355-25585538
Length = 135
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 107 KIMGCCSPCSRNPRTVALTATTQVETHRGIVCKK 208
KI GC S S + R + ATT HR +C++
Sbjct: 30 KIHGCYSSSSSSSRAPVVVATTASFLHRCFLCRR 63
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 364 PPVPKPDDHLPVNKES--PERASPPLYEVELTASDEDED 474
PP P P+ H P +S PE SPP+ T+ E+
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 310 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 489
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 339 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 398
Query: 490 L-VIPMQSSRY 519
L + M S Y
Sbjct: 399 LWFVEMWHSGY 409
>05_01_0187 + 1349725-1352238
Length = 837
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 310 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 489
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 302 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 361
Query: 490 L-VIPMQSSRY 519
L + M S Y
Sbjct: 362 LWFVEMWHSGY 372
>03_01_0430 +
3320198-3320215,3320496-3320642,3321157-3321268,
3321389-3321504,3321557-3321671,3321791-3321915,
3322145-3322215,3322308-3322368
Length = 254
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 361 WPPVPKPDDHLPVNKESPER 420
W P +P DHLP KE E+
Sbjct: 222 WTPYNRPHDHLPARKEYVEK 241
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 292 EELAKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYE 441
EE A P L + D D+D + PP+P + K P SP + E
Sbjct: 1041 EEAAGPPPALELEAMDVDMDAIHPPPLPFDSGVESLQKPLPRAPSPIMQE 1090
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 328 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 474
D+DD+D PP KP P + P++ P + A+D+D+D
Sbjct: 15 DDDDDDAPAADAPPKAKPPPP-PSSSSGPKK--PKQRRLSSAAADDDDD 60
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 289 DEELAKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDED 468
D+++ ++ CDEDD D D+M+ P+ +P E+ +R P + + T + +
Sbjct: 24 DDDIGPRAIIIDCDEDDTD-DVMEVVPLKM---LMPKEVENEQRTVPGIPQTCNTQNTSN 79
Query: 469 EDTSVLELVIPMQS 510
T+ E+ + Q+
Sbjct: 80 GRTNTTEVPVKGQN 93
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.9 bits (59), Expect = 9.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 337 DEDLDMMQWPPVPKPDDHL 393
D+ + ++PP+PKPD H+
Sbjct: 307 DDGMKWKEFPPMPKPDSHI 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,981,584
Number of Sequences: 37544
Number of extensions: 388105
Number of successful extensions: 1270
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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