Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1869
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein pr...    36   0.034
U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved oligo...    36   0.034
U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   8.9  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   8.9  

>Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein
           protein.
          Length = 681

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 23/94 (24%), Positives = 47/94 (50%)
 Frame = +2

Query: 395 PSTRRVRSVLHRLSMKSNLQLRTKMKTHQFSN*SFRCSRRVTSEYLHRHQRK*SQNHENS 574
           PS+   R++L  +  K NL +  K++TH+F     +C + ++ E     +   S+N EN+
Sbjct: 336 PSSHTCRAMLKSIRDKFNLLVYFKLETHRFGK---QCDQLMSPEMFAEPET--SENRENT 390

Query: 575 SAIFCAVSASKIYIVSNGITMIXILXPML*NVIW 676
             + C VS + I  + + +    +  P + + +W
Sbjct: 391 PQLHCGVSRAIITAIEH-VWSDDVYLPPIVDKLW 423


>U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 2 protein.
          Length = 681

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 23/94 (24%), Positives = 47/94 (50%)
 Frame = +2

Query: 395 PSTRRVRSVLHRLSMKSNLQLRTKMKTHQFSN*SFRCSRRVTSEYLHRHQRK*SQNHENS 574
           PS+   R++L  +  K NL +  K++TH+F     +C + ++ E     +   S+N EN+
Sbjct: 336 PSSHTCRAMLKSIRDKFNLLVYFKLETHRFGK---QCDQLMSPEMFAEPET--SENRENT 390

Query: 575 SAIFCAVSASKIYIVSNGITMIXILXPML*NVIW 676
             + C VS + I  + + +    +  P + + +W
Sbjct: 391 PQLHCGVSRAIITAIEH-VWSDDVYLPPIVDKLW 423


>U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical
           protein B0361.7 protein.
          Length = 422

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 355 MQWPPVPKPDDHLPVNKESPERASPPLYEVELTA 456
           + W P+P      P +KE  E AS P  E+E+ A
Sbjct: 128 LMWQPIPVHTISKPTDKELYEEASCPTAEIEMNA 161


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 331 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 474
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 331 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 474
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 313  PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 492
            PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815  PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 493  VI 498
            V+
Sbjct: 875  VV 876


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 313  PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 492
            PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815  PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 493  VI 498
            V+
Sbjct: 875  VV 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,948
Number of Sequences: 27780
Number of extensions: 326786
Number of successful extensions: 1012
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)