Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1868
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   4.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   7.2  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   7.2  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 346 KIRVYDDAGWHISIRNKCTSMSTLPLSALIFNFQA 450
           K+R Y      ++ + K TS + +PLS L+F+ +A
Sbjct: 768 KLRYYSSKILAMTAKTKLTSKNWIPLSGLLFSLRA 802


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 144 LLFIEAIKGPFLFPLPVW-NIPPFKFRIK 61
           ++F   IKG   FPLP+W  I  F  RI+
Sbjct: 354 IVFYPGIKGTVGFPLPIWVEIKGFVARIR 382


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 139 EKIREYFPLPRVITSLFNLC--STLFKIEIVE 228
           E+IR  +P P+V++    +C  ST F + +++
Sbjct: 229 EEIRNDYPFPQVVSCTVEMCNLSTTFDVAVID 260


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 153  FSYLLFIEAIKGPFLFPLPVWN-IPPFKFRIKASFFR 46
            F +LLF+ A  G F+  +  W  IP  K+ IK  F R
Sbjct: 1103 FFWLLFLYAKNGFFVQNISKWPIIPRMKYFIKHKFLR 1139


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 142 SLHRSHKGTIFVSVASMEYPTIQVSNQSLFLSRSA 38
           + HR+H+G I + ++  + P I+  N SL   + A
Sbjct: 154 AFHRTHQGIISLLLSLKKKPVIRYDNNSLLCLKLA 188


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 753  PWTDXTRPWDSXCFEDFSL 697
            PW +    WD  C+ +FSL
Sbjct: 985  PWGNSRTRWDMECYGEFSL 1003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,724
Number of Sequences: 5004
Number of extensions: 76418
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)