Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1868
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 126 2e-29
01_06_1700 + 39282713-39282833,39283184-39283305,39283650-392838... 75 5e-14
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 38 0.009
05_03_0038 + 7612866-7613132,7615691-7616608 29 3.3
02_03_0167 - 15923872-15925683 29 3.3
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 29 5.7
07_03_1637 + 28293033-28293779,28294652-28295233,28295650-282958... 28 7.5
06_01_0225 - 1727461-1728825 28 7.5
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 126 bits (304), Expect = 2e-29
Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Frame = +1
Query: 22 EIELLQRYAKERGFD--SKLEWWDIPYWQRKQKWSLYGFDEEKIREYFPLPRVITSLFNL 195
++E L+ +AKE + L WD+ +W + + S Y +EE +R YF LP+V+ LF+L
Sbjct: 387 DMEDLKAFAKESASPEANDLAHWDLSFWSERLRESKYDINEEDLRPYFALPKVMDGLFSL 446
Query: 196 CSTLFKIEIVERTGQVHTWHKDVKFYDIYDDSSNTPIAGFYLDPYARQDQKI-RVYDDAG 372
+ LF + + G W+ DVKFY + DSSN+P+A FY DPY+R +K + +
Sbjct: 447 ANRLFGVSVEPADGLAPVWNSDVKFYCV-KDSSNSPVAYFYFDPYSRPSEKRGGAWMNVV 505
Query: 373 WHIS-IRNKCTSMSTLPLSALIFNFQAPAEGKPSLLSFNEVGVLFQRFGHSLRHLLTKAN 549
+ S + + S LP++ ++ N P KPSL++F EV +F FGH+L+H+LTK +
Sbjct: 506 FSRSRVLARNGSPVRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQD 565
Query: 550 YSEVARI 570
V+ I
Sbjct: 566 EGFVSGI 572
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 579 VEWDAAEVCGQVMSHWLYD------PHTIRAVSGHYNTDEPLPEXIVKNLQNXRSPMGGX 740
VEWDA E+ Q M +W Y +T+ +++ HY T E LPE I L ++ G
Sbjct: 575 VEWDAVELPSQFMENWCYHNCFVGARNTLLSIAKHYETGELLPEEIYAKLVAAKNFRAGT 634
Query: 741 NLSRELYFSN 770
R++ F++
Sbjct: 635 FSLRQIRFAS 644
>01_06_1700 +
39282713-39282833,39283184-39283305,39283650-39283813,
39284762-39284780,39284927-39285106,39285355-39285432,
39285578-39285658,39286010-39286102,39286321-39286401,
39286499-39286661,39286778-39286898,39287183-39287255,
39287528-39287635,39287922-39288019,39288106-39288151,
39288514-39288610,39288940-39289013,39289092-39289196,
39289284-39289364,39289446-39289556
Length = 671
Score = 75.4 bits (177), Expect = 5e-14
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Frame = +1
Query: 22 EIELLQRYAKERGFDSKLEWWDIPYWQRKQKWSLYGFDEEKIREYFPLPRVITSLFNLCS 201
E+ +L+ E D++ D+ Y+ ++ + D +I+++FP+ VI+ + +
Sbjct: 305 ELSVLKDLKMEEEGDAQFSVEDLLYYMKRAEELKVDLDIGEIKQFFPVDLVISGILKMFQ 364
Query: 202 TLFKIEIVERTGQVHTWHKDVKFYDIYDDSSNTPIAGFYLDPYARQDQKIRVYDDAGWHI 381
LF + E TWH V+ + ++D SS+ + F+LD ++R+ + +
Sbjct: 365 DLFALRF-EEMKDAETWHDTVRLFSVWDASSSDLLGYFFLDIFSREGKYAHT-----CVV 418
Query: 382 SIRNKC-TSMSTLPLSALIFNFQAPAE--GKPSLLSFNEVGVLFQRFGHSLRHLLTKANY 552
+++N+C S T + + Q P E G +LL F EV +F F H + H+ +A +
Sbjct: 419 ALQNRCLCSNGTRKVPVAVLLSQCPKEFDGNSALLRFPEVVRIFHEFSHVVHHISNRATF 478
Query: 553 S 555
S
Sbjct: 479 S 479
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 573 LMVEWDAAEVCGQVMSHWLYDPHTIRAVSG-HYNTDEPLPEXIVKNLQNXRSPMGGXNLS 749
L +E D AE+ ++ +W Y+ +++ +SG H + + + ++L+ R G L
Sbjct: 484 LQLEGDFAEIPSLLLENWCYENISLKMMSGFHQDITKSITSEACQSLKRRRDIFAGLKLK 543
Query: 750 REL 758
+E+
Sbjct: 544 QEI 546
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 67 SKLEWWDIPYWQRKQKWSLYGFDEEKIREYFPLPRVITSLFNLCSTLFKIEIVE-RTGQV 243
+KLE WD Y+ K +++ D + YFPL + + L L +LF + G
Sbjct: 319 AKLEPWDEDYFIGMMKSAVHNLDVSVVAAYFPLSQCLKGLNVLVESLFGATFHQIPMGDG 378
Query: 244 HTWHKDV 264
+WH DV
Sbjct: 379 ESWHPDV 385
Score = 31.5 bits (68), Expect = 0.81
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 346 KIRVYDDAGWHISIRNKCTSMSTLPLSALIFNFQAPAEGKPSLLSFNEVGVLFQRFGHSL 525
+I + D WH + K + + AL+ NF + ++ L + +V LF FGH+L
Sbjct: 372 QIPMGDGESWHPDVM-KLSLHHPDEIVALVCNFSSSSKIMARLNHW-DVETLFHEFGHAL 429
Query: 526 RHLLTKANY 552
LL++ Y
Sbjct: 430 HSLLSRTEY 438
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +1
Query: 148 REYFPLPRVITSLFNLCSTLFKIEIVERTGQVHTWHKDVKFY------DIYDDSSNTPIA 309
RE PL R++ SLF LCS K R T +DVKF D + D +P+
Sbjct: 302 REPSPLFRILRSLFGLCSAEAKKNRRLRNSAKKT-ARDVKFLKARYYEDHHIDIPPSPL- 359
Query: 310 GFYLDPYARQDQKI 351
GF +P +D++I
Sbjct: 360 GFEAEPDEPEDEEI 373
>02_03_0167 - 15923872-15925683
Length = 603
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 424 SALIFNFQAPAEGKPSLLSFNEV-GVLFQRFGHSLRHLLTKANYS 555
SA+I + EG +L+ F E+ FQ G + H+LT NYS
Sbjct: 426 SAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTACNYS 470
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 91 PYWQRKQKWS-LYGFDEEKIREYFPLPRVITSLFNLCSTLFKIEIVERTGQVHTWHKDVK 267
P W + KW L G DEEK R +P+ V ++N ++K+ I W KD
Sbjct: 127 PEW--RFKWEPLAGADEEKGRGEYPMVMVQIPMYNELE-VYKLSI--GAACELKWPKDKL 181
Query: 268 FYDIYDDSSN 297
+ DDS++
Sbjct: 182 IVQVLDDSTD 191
>07_03_1637 +
28293033-28293779,28294652-28295233,28295650-28295863,
28295894-28295911,28295983-28296118,28296203-28296281
Length = 591
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 464 FPSAGAWKLKISADRGSVDIDVHLFRIEMCQPASS*T 354
F W L +S+D+G+V H+F I +C P+SS T
Sbjct: 458 FSPDSEW-LAVSSDKGTV----HVFHINVCSPSSSKT 489
>06_01_0225 - 1727461-1728825
Length = 454
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 154 YFPLPRVITSLFNLCSTLFKIEIVERTGQVHTWHKDVKFY 273
YF L ++ NL + +ERTG H W DV FY
Sbjct: 222 YFMLAVLVLKAVNLLAEAEDKSYIERTGTAHGW--DVLFY 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,622
Number of Sequences: 37544
Number of extensions: 493592
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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