Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1868
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical pr...    64   8e-11
Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical
           protein ZK550.3 protein.
          Length = 772

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
 Frame = +1

Query: 70  KLEWWDIPYWQRKQKWSLYGFDEEKIREYFPLPRVITSLFNLCSTLFKIEIVERTGQ-VH 246
           +L+ +D+PY  RK+    Y  +   +  +FP      ++  +   +F +E  + T + + 
Sbjct: 402 ELQAYDMPYVCRKEAEHHYDVNPLDLMNHFPFWPTFQNIMGVIGHIFNLEFKDITDKGLE 461

Query: 247 TWHKDVKFYDIYDDSSNTPIAGFYLDPYARQDQKIRVYDDAGWHISI-RNKCTSMSTLPL 423
             H DV+ Y + D  S       Y+DPY RQ+++       GW++ + R +        +
Sbjct: 462 KAHADVRIYSVGDKFSGQHYGRLYIDPYDRQNKR------GGWNVMLARPESKERGLDKI 515

Query: 424 SALIFNFQAPAEGKPSLLSFNEVGVLFQRFGHSLRHLLTKANYSEVARIV*WS 582
              I +  AP    PSLL   ++  L   FG S++ LL+++ Y +++  + WS
Sbjct: 516 VYFIGSAIAPTSNGPSLLHHQQLQQLLFHFGRSVQLLLSQSPYRDIS--IPWS 566


>Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical
           protein C06B8.9 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 564 PDCLMVEWDAAEVCGQVMS 620
           PDCL  EW   ++ GQVM+
Sbjct: 90  PDCLKQEWVLVDILGQVMA 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,118,597
Number of Sequences: 27780
Number of extensions: 433024
Number of successful extensions: 1023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)