Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1866
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   4.1  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   4.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.5  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 158 LCSFTVRFQRSFCHVPSRYGMSSPPGCFPIAI 63
           L +F   F+R    +P+ Y +S+PPG   +AI
Sbjct: 9   LNTFQACFRRFVHQIPTIYALSTPPGTSAVAI 40


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 499 TVPVVTIDSNHFLSRRPYMLCSLPLCTSSAN*NKYKVNKIDCSPPE*SSSILPGATCS 326
           +VP  TIDS+ F S  P  L S    ++S++ +      ID +P   ++S L   T S
Sbjct: 262 SVPTQTIDSSSFTSSTPVSLTS---SSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSS 316


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 279 YRAFLIESSYCQS*QVEQVAPGSMDELYSGG 371
           Y AF +E S      +E +  GSMD+LY+GG
Sbjct: 382 YGAFFVEGSVFIC--MEYMDAGSMDKLYAGG 410


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 543 VSMTHLLNVKIQITMLTLPPVPKKATVLR--RTGETNS 650
           VS+T +++V       TLPP P  A  LR  R G T+S
Sbjct: 357 VSLTDIISVLYAHMKGTLPPAPHSAPSLRHGRRGSTSS 394


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 23   LNTFNQPRLKKDML*RSGNTLEGSSFHSG 109
            +NT+ + R +KD +   G TL    FH+G
Sbjct: 1240 VNTYCESRQQKDFIDLMGKTLSSVLFHAG 1268


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 300 FLSRRPYMLWSLPLCTSSAN*SKYKVNNIDSYYI*TAHRRSRILPGATVF 151
           FL  +PY +WSL     S     Y+ + +++     A +R RIL  +TVF
Sbjct: 442 FLRIKPYCVWSLFAKDISRPLKSYRADIVEA-----ALKRLRILLASTVF 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,617
Number of Sequences: 5004
Number of extensions: 56726
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)