Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1866
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977...    32   0.61 
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029...    29   4.3  
04_03_0095 + 11114971-11115939,11115954-11116556                       28   9.9  

>06_02_0136 +
           12195422-12195435,12196047-12196122,12196896-12197707,
           12197941-12198010,12199469-12199557,12199633-12199666
          Length = 364

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 371 TAGVEFIHTTWSHLFHLSRLTVTTFYQEGPICYG 270
           +AGV  ++  + H+  L  L V TFYQ+G   YG
Sbjct: 10  SAGVACVYFAFLHILVLRTLQVCTFYQKGSCSYG 43


>07_03_0960 -
           22902279-22902530,22902604-22902726,22902855-22902941,
           22903017-22903068,22903197-22903321,22903476-22903684,
           22903990-22904191,22906205-22906309,22907264-22907325,
           22907625-22907814,22907887-22907982,22908069-22908171,
           22909117-22909220,22910239-22910325,22911238-22911323,
           22911410-22911502,22912586-22912673,22912786-22912898,
           22912989-22913111,22914473-22914524,22915185-22915286,
           22915539-22915582,22915667-22915740,22915825-22915916,
           22916566-22916633,22918572-22918647,22918767-22918952
          Length = 997

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 150 IHSAFPEIFLPRTIPLWNELPSRVFPDRYNMSFFKRGWLK 31
           +H   P IFLP  + L N      FP     + F R W K
Sbjct: 508 LHMPKPNIFLPSDLSLKNAEEKASFPCMLRKTLFSRVWYK 547


>04_03_0095 + 11114971-11115939,11115954-11116556
          Length = 523

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 21  RLILSTSLV*RRTCYS--DRETPW--RGAHSIAGWYVAKRSLET 140
           RL+L  +LV  R C     ++  W  +  H I GW+V+K +  T
Sbjct: 478 RLLLGNALVLERVCVKLVKQKLAWQLKQKHDIEGWFVSKSAKAT 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,929
Number of Sequences: 37544
Number of extensions: 366478
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)