Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1865
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.94 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    28   1.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   2.2  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    27   2.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   5.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.7  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +3

Query: 216 WYFFLLNQHSFFYDNL*KFIIIKYILCNLF*C*N*RALMFVKSEGNFLQLLEFVELTPSK 395
           W FFLL++  F   N+ +     + L   F     R L  +     FLQ+L  ++L   +
Sbjct: 702 WQFFLLSRSKFAKINVIERSYFVFALLYSFLSFLQRPLGHLSLFSCFLQILLLIQLKQWQ 761

Query: 396 ESFGHHNFMVS 428
            S GH+ F V+
Sbjct: 762 PSVGHNFFSVT 772


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 513 PAPICDEQPSAHHTTKATSPPDAKPTSL 430
           PAP+  +Q S  H + AT PP A PTS+
Sbjct: 476 PAPM--DQFSTFHQSMATLPPGAVPTSI 501


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 140 FSTPYKFELTFTLSRTLKTRTKHTEWR 60
           FS PYKFE+TF     LK+     EW+
Sbjct: 18  FSDPYKFEITFECLEPLKS---DLEWK 41


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 216 WYFFLLNQHSFFYDNL*KFIIIKYILCNL 302
           W+   L+ +S+ YDN+  +  +KY LC+L
Sbjct: 95  WFLAELHGYSYLYDNISDY-GLKYFLCSL 122


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 168  KKPAISMYTVLI*YYSWYFFLLNQHSFFYDNL*KFIII---KYILCNLF 305
            +KP + ++ V+  Y+ W  FL  ++ FF  N+ K+ II   KY + + F
Sbjct: 1090 EKPYL-IHNVVGLYFFWLLFLYAKNGFFVQNISKWPIIPRMKYFIKHKF 1137


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 534 TTIFGTTPAPICDEQPSAHHTTKATSPPDAKPTSLNSP*SCGAQNFPSKASIQQIPTIVE 355
           TTI G +P+ I    PS++    ++S     P S+  P +  +    SK       + V 
Sbjct: 543 TTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVN 602

Query: 354 NY 349
           NY
Sbjct: 603 NY 604


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 549 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPPDAKPTSLNSP*SCGAQNFPSKAS 382
           T + S+++  TT +      PS+  TT  TSP  +  +S +S  S  + +  S +S
Sbjct: 125 TTVSSSSVSSTTSSS-SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 562 FPPKYFFTIYYHLW 521
           FPPKYFF +   LW
Sbjct: 550 FPPKYFFALGLVLW 563


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = -1

Query: 585 FSGGNFQRFHQNT--FLRSTTIF-----GTTPAPICDEQPSAHHTTKATSPPDAKPTSLN 427
           F+ G+F  F  ++  FL ++T          P+ +    PS+ HTT    P ++  +SL 
Sbjct: 217 FASGSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLF 276

Query: 426 SP 421
           SP
Sbjct: 277 SP 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,675
Number of Sequences: 5004
Number of extensions: 65166
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)