Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1865
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical ...    33   0.29 
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    32   0.38 
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.9 protein.
          Length = 314

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 573 NFQRFHQNTFLRSTTIFGTTPAPICDEQPSAHHTTKATSPPDA 445
           N  +F  +T L++    G +  P+ + +P+A  T +A SPP A
Sbjct: 154 NASQFDTSTILKAIAALGGSSKPVANGKPAAAPTKQAVSPPPA 196


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -1

Query: 567 QRFHQNTFLRSTTIFGTTPAPICDEQPSAHHTTKATSPP-DAKPTSLNSP*SCGAQNFPS 391
           Q     T L STT    TP PI     +   TT  T+ P     TS + P +    + P+
Sbjct: 70  QACQATTTLSSTTASTVTPTPILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPT 129

Query: 390 KASIQQIPTIV 358
                Q+PT V
Sbjct: 130 TVPSTQLPTTV 140


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 552 NTFLRSTTIFGTTPAPICDEQPSAHHTTKATSPPDAKPTSLNSP*SCGAQNFPSKASIQQ 373
           N+   STT + +TP       P+A   T  T+PP   PT+  S    G    P+ A  Q+
Sbjct: 613 NSTSTSTTAYTSTPTASI---PAATAITTTTAPPKPSPTTSESSLITGDLGAPAGAVAQK 669

Query: 372 IPT 364
           + T
Sbjct: 670 MTT 672


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 1   LNSVHIFQHTN-LKNKTSLDCRHSVCLVRVFNVLDSVKVN 117
           L+SV  F+H N + N +++   +  CLV VFN  ++VKV+
Sbjct: 232 LSSVPTFEHYNWVTNSSAMATANDNCLVLVFNGNNAVKVD 271


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 549 TFLRSTTIFGTTPAPICDEQPSAHHTTKATSPPDAKPTSLNSP*SCGAQNFP 394
           T   STT F TT      +  +   T   T P    PT+  +P  C A+  P
Sbjct: 322 TTTASTTTFKTTTITTTTQTTTPTTTATTTKPTTTTPTTTRTPVDCSAKCDP 373


>Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical
           protein F35E2.9 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 555 QNTFLRSTTIFGTT--PAPICDEQPSAHHTTKATSPPDAKPT 436
           QNTF   + ++ +   P  IC   P    TT  T+ P++KPT
Sbjct: 252 QNTFYTMSFLYKSLCEPTGICSLPPGELVTTTTTTTPNSKPT 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,301
Number of Sequences: 27780
Number of extensions: 372284
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)