Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1861
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   8e-04
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.17 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.7  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 179 NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 337
           +R+     P +   +P G+ P++  DG  Y +S AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 352 VDLEGLLVIGPGEPVLATEVPADGGA 275
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   HEVYFHFSFQRGATCYRTIINYCTITR 81
           HE Y   ++ R  TCY+TIIN  ++ R
Sbjct: 299 HEEYIRTNY-RCPTCYKTIINVNSLFR 324


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 206 EFKPKTPFGQMPVLEIDGK 262
           E K ++P GQ P LE DG+
Sbjct: 11  ELKDESPIGQSPHLENDGR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,405
Number of Sequences: 5004
Number of extensions: 27784
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)