Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1861
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 40 8e-04
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 38 0.003
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 36 0.014
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 36 0.024
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 34 0.056
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 34 0.056
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 34 0.074
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 33 0.097
03_01_0249 - 1935355-1935827,1936129-1936330 32 0.23
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 32 0.23
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 32 0.30
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 31 0.69
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 30 1.2
09_02_0101 - 4293724-4293903 28 4.8
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 28 4.8
11_07_0003 - 27182551-27183054 27 6.4
09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932... 27 6.4
09_02_0278 + 6691685-6692188 27 6.4
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 27 6.4
02_05_0600 - 30273080-30274692,30274709-30274949 27 6.4
02_05_0160 - 26382377-26382874 27 8.5
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 27 8.5
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 27 8.5
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 176 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 328
D R ++ P F PFGQ+PVL+ + +S AI RY+ KY GA+
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 310
PE + PFG++PVLE QS AI RY+ RKY
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFRKY 79
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 36.3 bits (80), Expect = 0.014
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 110 PRQGPRRAASRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDGKQYA-Q 274
P Q A L L G E+E D + PE + PFGQ+P + DG Y +
Sbjct: 9 PAQSTNVARVLLCLEEVGAEYEVVNVDFTVMEHKSPEHLKRNPFGQIPAFQ-DGDLYLFE 67
Query: 275 STAICRYLGRKY 310
S AI +Y+ RKY
Sbjct: 68 SRAIGKYILRKY 79
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 328
PE + PFGQMP + +S A+ RY+ RKY + AN
Sbjct: 44 PEHLKRNPFGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 34.3 bits (75), Expect = 0.056
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 191 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGR---KYGLAGANDEEAFEIDQNV 361
S PEF P G++PVLE +S AI RY+ R L G++ + I+Q +
Sbjct: 63 SNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWM 122
Query: 362 EF 367
+F
Sbjct: 123 DF 124
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 34.3 bits (75), Expect = 0.056
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 310
P+ + PFGQ+P + +S AICRY+ RK+
Sbjct: 44 PDHLARNPFGQVPAFQDGDLMLFESRAICRYILRKH 79
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 33.9 bits (74), Expect = 0.074
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 194 ENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 310
+N PE + PFG++P L+ +S AI +Y+ RKY
Sbjct: 41 QNSPEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKY 79
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 33.5 bits (73), Expect = 0.097
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYA-QSTAICRYLGRK 307
P+ + PFGQ+P L+ DG + +S AIC+Y+ RK
Sbjct: 44 PDHLARNPFGQVPALQ-DGDLFLWESRAICKYVCRK 78
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAG 322
P F PFGQ+P + +S AICRY+ +Y +G
Sbjct: 45 PSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYADSG 84
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 149 LAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRK 307
L G+++E D I+ PE + PFGQ+P L+ +S AI +Y+ RK
Sbjct: 21 LEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQDGDLILFESRAISKYVLRK 77
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 191 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYL 298
S PEF P G++PVLE +S AI RY+
Sbjct: 39 SNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYV 74
Score = 30.3 bits (65), Expect = 0.91
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 191 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYL 298
S PE+ P G++P+LE +S AI RY+
Sbjct: 600 SNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYV 635
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 203 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYG 313
P + PFGQ+P E +S AI +Y+ RK+G
Sbjct: 44 PPHISRNPFGQVPAFEDGDLTLFESRAISKYILRKHG 80
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 153 LTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSP 320
L R+S+++ HLK G S+L R RC + A + + A +A + A SP
Sbjct: 640 LHEGRASESLTTHLKAGGASDLTSFIGRVRCSPAVALALVVAAAAAAAATAKLYSP 695
>09_02_0101 - 4293724-4293903
Length = 59
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -1
Query: 197 FQMKCDCLRTPGRR--KPAAACW 135
F+ CDCLR P RR +P A W
Sbjct: 28 FRRLCDCLRHPQRRPARPVRALW 50
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 218 KTPFGQMPVLEIDGKQYAQSTAICRYLGRKYG----LAGANDEEAFEIDQNVE 364
++PFG++P E +S AI RY+ R Y L N EE+ +D +E
Sbjct: 48 RSPFGKIPAFEDGEVTLFESRAIQRYVLRNYNKPDLLREGNLEESAMVDMWME 100
>11_07_0003 - 27182551-27183054
Length = 167
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 252 STASSTLRAPPSAGTSVASTGSPG 323
ST S A PS+G + A+TGSPG
Sbjct: 57 STRSPVGSASPSSGRNPATTGSPG 80
>09_02_0431 -
9327167-9327226,9327347-9327474,9327594-9327709,
9327816-9327895,9328787-9328912,9329676-9329856,
9330514-9330578,9330655-9330915
Length = 338
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 156 TAARSSKTIAFHLKTGQNSNLRLRSVRCRC-WKSTASSTLRAPPSAGTS 299
TAA S A + S LRL + R R + STAS + APP+A S
Sbjct: 4 TAASSLSAAAAAARRSFPSRLRLLARRRRLPFSSTASFSAAAPPAAAAS 52
>09_02_0278 + 6691685-6692188
Length = 167
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 252 STASSTLRAPPSAGTSVASTGSPG 323
ST S A PS+G + A+TGSPG
Sbjct: 57 STRSPVGSASPSSGRNPATTGSPG 80
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +2
Query: 191 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAND 331
++ P++ P G+ E D ++S I R++ KY G D
Sbjct: 42 TQRMPQYLKLQPLGEALTFEDDNLTLSESRGILRHIAHKYARQGNPD 88
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +3
Query: 240 RCWKSTASST-LRAPPSAG 293
RCW ST+SST L +PP G
Sbjct: 63 RCWASTSSSTGLPSPPPTG 81
>02_05_0160 - 26382377-26382874
Length = 165
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 234 RCRCWKSTA--SSTLRAPPSAGTSVASTG 314
RCRC + A SST+ PP G +V+ G
Sbjct: 34 RCRCHRHGAWSSSTMITPPPRGAAVSKLG 62
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 355 LVDLEGLLVIGPGEPVLATEVPADGGALSVLLAVDFQHRHLT 230
L +L L + G +L E+PA G LS L A+ QH L+
Sbjct: 195 LGNLSSLYFLNLGFNMLFGEIPASLGNLSQLNALGIQHNQLS 236
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 382 ANVVQELHVLVDLEGLLVIGPGEPVLATEVPADGGALSVLLAVDFQHRHLT 230
A + + L +L LLV+ GE L VPA G LS L+ V Q L+
Sbjct: 256 AKLTGSIPSLQNLSSLLVLELGENNLEGTVPAWLGNLSSLVFVSLQQNRLS 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,827
Number of Sequences: 37544
Number of extensions: 229766
Number of successful extensions: 798
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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