Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1860
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   2.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   2.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.8  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   6.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   6.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   8.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.7  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 95   QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGR 232
            ++ GG   L  L+L M +  ++ A ++ +   DAA DL    ++GR
Sbjct: 1085 ELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGR 1130


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 593 NIPTIKTGYESFDKYEDQIISXINDLKNTYGFHHIEPASNSLVRSXLSE 739
           N+   K  Y +F    +  I+ +N+L  TYG+ +      +++ S +S+
Sbjct: 312 NVVATKGSYNTFQGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSK 360


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 261  FSLPYFRTYASSVLMQISRGTSEIAMNSKFPTNRLILSYQLRQLN 395
            F+LP+      + L  IS+  SEI+ N K    +  LS++ R  N
Sbjct: 915  FNLPFHVKQLYTWLAPISKYDSEISFNQKKERRKTFLSFERRGKN 959


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
 Frame = -1

Query: 393  SVVSTDRIISACLLGTLNS*LSPMSLGLSASVHLTHTFGSTA----GRRPVSARAAIPRP 226
            S VST    S+    + +S  S +S  L++S+  T TFGST+    G RP  + +     
Sbjct: 727  SSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVV 786

Query: 225  KSQASCKSLAASVPVTA*IHACLKGDMSMNNDRVLSGDIPPKTCSQAGG 79
             + ++  S+ ++   T      +    +     +++  I P T S  GG
Sbjct: 787  PTTSTGSSVTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTGG 835


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 437 SHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTG 616
           ++ ID    KHI D +++   + S+    +LY  D      +  F    R+N IP     
Sbjct: 155 TYAIDENGQKHIVDARMWTEAYMSEVLRSLLYSDD-----TNSRFAGHRRFNPIPNPDAE 209

Query: 617 YESFDKYE 640
              F+  E
Sbjct: 210 LRFFEAAE 217


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 395 SNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDT 538
           S AK+ +    P +SH +DS KS   +D+ +    HT+ Y    L  T
Sbjct: 201 SRAKSTESTSSPELSHSLDSSKS-IASDMPIHRASHTTGYAAASLTST 247


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 356 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDV 481
           K+A+     E   S    +  I  PL+S + D L SKH+ D+
Sbjct: 258 KKAEKRFEEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDL 299


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 147 CRLSDKRVFTPSPAQTPLKICTKLV 221
           C     R+FT  PAQ P   C K++
Sbjct: 39  CESCVDRIFTTGPAQCPTPGCNKIL 63


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 566  HFDDKERYNNIPTIKTGYESFDKYEDQIISXINDLKNTYG 685
            +FD +  Y+ IP+  TG  SF +  D     I     TYG
Sbjct: 962  NFDFRRPYSVIPSRMTGRSSFTQLSDDSDETIILASATYG 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,146
Number of Sequences: 5004
Number of extensions: 72252
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)