Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1860
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0313 + 22306497-22308938 31 0.98
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 31 0.98
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 29 3.0
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 3.9
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 5.2
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 5.2
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 28 6.9
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 28 6.9
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.9
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639... 28 6.9
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 28 6.9
01_01_0755 - 5827893-5829764 28 6.9
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 28 6.9
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 28 9.1
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 28 9.1
07_01_0297 - 2156960-2157736 28 9.1
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 28 9.1
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365 28 9.1
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 28 9.1
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 28 9.1
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022 28 9.1
>11_06_0313 + 22306497-22308938
Length = 813
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 162 CLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGACTCGPSCRIR 7
CL GD + + +GD+P S +G + +EC+ +CTC +CR R
Sbjct: 585 CLPGDNNCSCTHRNAGDLP---YSASGILVSRMPMLYECNDSCTCSHNCRNR 633
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 28 TGASARTLPSPAARCIPPPRLRTGLRGNI---AAQDPVIVHGHV-AFQTS 165
T A PSP PPP G+ G + A P +V G+V +F TS
Sbjct: 285 TAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTS 334
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 66 TMHPSPPPANRSSGEYRRSGPCHCS---WT 146
T PPP NR +R S PC C+ WT
Sbjct: 127 TSDRQPPPMNRRMRHHRASAPCPCADVLWT 156
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 33 CKRPNTPITSCTMHPSPPPA 92
CK PI+ CT P+PPPA
Sbjct: 104 CKVQAPPISQCTAVPTPPPA 123
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 27 HRCKRPNTPITSC-TMHPSPPPANRSSGEYR 116
HRC P+ +C T P+PP SS E R
Sbjct: 332 HRCSTTTQPLPTCGTPAPAPPAGQPSSAEDR 362
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 95 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAA 244
++ GG L LSL + + F+ A ++ + DAA DL ++GR + A
Sbjct: 1078 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKA 1127
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 162 CLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGACTCGPSCRIR 7
CL GD + + + GD+P S G +ECS C C +CR R
Sbjct: 447 CLPGDPNCSCAQQNGGDLP---YSATGLLAKHTPMVYECSSNCQCSHNCRNR 495
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 162 CLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGACTCGPSCRIR 7
CL GD + + + GD+P S G +ECS C C +CR R
Sbjct: 432 CLPGDPNCSCAQQNGGDLP---YSATGLLAKHTPMVYECSSNCQCSHNCRNR 480
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 42 PNTPIT-SCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSDKRVFTPSPAQTPLK 203
P P T SC+ HP+PPP + S S + P+ AQTP +
Sbjct: 77 PLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTR 131
>05_02_0078 -
6386278-6386291,6386462-6386594,6386721-6388613,
6391153-6391239,6391691-6391765,6393982-6394327,
6394428-6394450
Length = 856
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 168 HACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGA 37
H + D S DR++S I +A GRD W E SGA
Sbjct: 288 HCNVYSDKSNEADRLVSAKISSHENKEASGRDIYDRWTSESSGA 331
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 470 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 372
CV+ CQ + R++PR P L W+Q++ G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595
>01_01_0755 - 5827893-5829764
Length = 623
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -1
Query: 321 SLGLSASVHLTHTFGSTAGRRPVSARAAIP 232
S+G +++ L+++FG+T GR PV+A A P
Sbjct: 77 SVGPCSTLLLSNSFGATYGRPPVTAAYAPP 106
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 321 SLGLSASVHLTHTFGSTAGRRPVSARAAIP 232
S+G +++ L+H+FG T GR PV+ A P
Sbjct: 66 SVGPCSTLLLSHSFGYTYGRGPVTVAYAPP 95
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 APEHSHHQLHDAS-LPPACEQVFGGISP 118
A H HHQ+ A L P +Q FGG SP
Sbjct: 375 AEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 233 GMAALALTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNKQAD 367
G+AA A G + V+ VCV T A +P+ I + +F + ++ D
Sbjct: 5 GLAADARCGAIDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKD 49
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -3
Query: 307 CISTLDAYVRKYGREKAGQRQSCHSSS*ITSFV----QIFSGVCAGDGV 173
C DA + YG EK GQR C + + + + V AG GV
Sbjct: 149 CDDDDDAILPDYGEEKEGQRTMCFGENAVRKIAVCSPDLVAAVIAGSGV 197
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 352 GNFEFIAISDVPRLICISTLDAYVRKYGREKAGQR 248
G+++ I IS + +ICISTL +++ EK QR
Sbjct: 339 GSYDCICISIIFLIICISTLLIKIQRMKLEKEKQR 373
>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
Length = 144
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -1
Query: 642 SSYLSKDSYPVL----MVGMLL*RSLSSKCTWA 556
SS+ ++++P++ +VG LL R +++ CTWA
Sbjct: 78 SSFPDEETFPIVICETLVGYLLYRMINAGCTWA 110
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 1 LVPNSARGSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDP 129
L+P S+ ++A T PA PPP R G G A P
Sbjct: 49 LMPKPPPSSSSSAAATPAPPAPAAPPPPTSRRGGGGGAALPPP 91
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 365 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 478
D I+ + TT+++ +D+ LVSH IDS+ SK TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173
>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
Length = 382
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 2 SCRIRHEGPQVQAPEHSHHQLH 67
SC RH P VQ P H + + H
Sbjct: 67 SCHCRHSRPMVQLPLHGYRRRH 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,423,703
Number of Sequences: 37544
Number of extensions: 532269
Number of successful extensions: 2214
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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