Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1860
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    32   0.38 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z79752-2|CAB02079.1|  172|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.5  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    29   3.5  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    29   3.5  
U53344-7|AAM15599.1|  183|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of...    28   6.2  
L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.    28   6.2  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   8.1  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   8.1  

>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +2

Query: 314 PRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFL 493
           PR +   Y F+VP    D  L  + +E  +  +K+ V P +     S K KH+  ++  L
Sbjct: 206 PRPVPSDYLFEVPAFPEDFGLQRQNSEKRSDVWKEFVKPAMRKAPLSDKKKHLHMLRDIL 265

Query: 494 VGHTSKYPYPILYDTDLKLKNAH 562
               +  P       D+   N H
Sbjct: 266 RRPKASKPIRSFEILDIFTNNTH 288


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 20  EGPQVQAPEHSHHQLHDASLPPACEQVFGGISP 118
           EG QV AP+H  H+      PP  +   GG SP
Sbjct: 106 EGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSP 138


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 501 IPPNIHIRSCMTLTSN*KTPTYTSTTRNATITSPP 605
           +P  +H +   T TS   T T  STT+N T+T  P
Sbjct: 241 LPFYLHYKEDTTTTSTTDTTTTISTTKNTTVTQKP 275


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 413 KDIVVPLVSHLIDSLKSKHITDVKVFLVGH--TSKYPYPILYDTDLKLKNAH 562
           K+I VP + ++  ++     T+  VFL GH  ++K PY  L    LK+KN H
Sbjct: 488 KNISVPCIPYVSANV----YTNDDVFLYGHATSTKNPYSTLQFKPLKIKNLH 535


>Z79752-2|CAB02079.1|  172|Caenorhabditis elegans Hypothetical
           protein D2005.2 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 479 VKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQ 646
           ++  L+G T+ YPY I   +     +  +     +R++N      G + FD+Y+D+
Sbjct: 16  LQCLLIGFTAAYPYLIFPASPSSGDSRRLVKRAFDRFDNSGVFSFGAKRFDRYDDE 71


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 95   QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 229
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 95   QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 229
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
            and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 95   QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 229
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 95   QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 229
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>U53344-7|AAM15599.1|  183|Caenorhabditis elegans Hypothetical
           protein T07H6.1b protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 497 GHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 643
           G++S+Y   +  D  LKL    +HF D + +N    + T Y S D   D
Sbjct: 73  GNSSQY---VSLDVPLKLLEGEIHFPDAQFWNTEAELITRYVSKDSETD 118


>U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.1a protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 497 GHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 643
           G++S+Y   +  D  LKL    +HF D + +N    + T Y S D   D
Sbjct: 592 GNSSQY---VSLDVPLKLLEGEIHFPDAQFWNTEAELITRYVSKDSETD 637


>U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of
           certain neuronsprotein 1 protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 510 NIHIRSCMTLTSN*KTPTYTSTTRNATITSPPS 608
           N+   S  T T+    PT TSTT   T T PP+
Sbjct: 342 NMTTTSTTTTTTTTPPPTTTSTTTTTTTTPPPT 374


>L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 510 NIHIRSCMTLTSN*KTPTYTSTTRNATITSPPS 608
           N+   S  T T+    PT TSTT   T T PP+
Sbjct: 342 NMTTTSTTTTTTTTPPPTTTSTTTTTTTTPPPT 374


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 130 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 47
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 130 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 47
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,247
Number of Sequences: 27780
Number of extensions: 431758
Number of successful extensions: 1524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)