Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1855
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    30   0.22 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    29   0.39 
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   2.8  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.5  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 89  FPPSRKQSERTYLLKTLAGCPIEEYKINRLLNI-TLLEGNGNFTDTDLFLIFSML 250
           F PS K         +    PI  Y ++  LNI +L+  +GN+  T LFLI   L
Sbjct: 367 FNPSTKGYSSIDFTLSSPVMPINGYSVSLWLNIESLMNDDGNYAPTTLFLISDFL 421


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 199 FQQRYVQEPVNLVLFNGTAS*SLQEVSSFTLLPRRRKVDD 80
           FQ +YV E +N +  NG  S  L+E  +F++L   +K  D
Sbjct: 328 FQSQYVPEGINTIWLNG-LSLDLEETDAFSILSLIKKEKD 366


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 405 TRSSPSWVVNCPVAAEIRLSHRFVLLANFSFKTA 304
           T+  P+W+    +  +  LSHR  LL +F +  A
Sbjct: 22  TQRLPNWISKRKLKKDYALSHRIELLQDFEYPEA 55


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 PFLEQ*LGSFKGEVRKQNESMGQSDFGSHW 372
           P ++   GSF GE++ Q   +G S FG  W
Sbjct: 104 PGIDASFGSF-GELKSQMVDVGNSVFGDGW 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,658
Number of Sequences: 5004
Number of extensions: 56167
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)