Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1855
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    29   3.8  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   6.6  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    28   6.6  
12_01_1012 + 10298548-10298731,10299141-10299211,10299289-102993...    27   8.7  
09_02_0313 - 7172635-7172856,7173071-7173271                           27   8.7  
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523     27   8.7  

>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 232 PHIQYANWWITGLHDPVPFLEQ*LGSFKGEVRKQNESMGQSDFGSH 369
           P+ +YA  W++ +HD V    Q L   +  V    + +G+    SH
Sbjct: 492 PNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKSH 537


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
 Frame = +2

Query: 155 EEYKINRLLNITLLEGNGNFTDTDLFLIFSMLTGGSQGYTTLF-----HFLNNN----WA 307
           E+ KI R L     + +GN   T+   I S++  G  G TTL        +  N    W 
Sbjct: 214 EKEKIVRWLTKASTDASGNLMSTNHIPILSLIGHGGMGKTTLAQRVCEEMVRKNFKVIWV 273

Query: 308 VLKEKFASKTNLWDSLISAATG 373
            + ++F   T++   ++ +ATG
Sbjct: 274 CVSDRF-DVTSVTSKILESATG 294


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = +1

Query: 322 VRKQNESMGQSDFGSHW----TIHDPRGTRSSVQLIRSSPGRIRVCRTHHRDFHEEDTRR 489
           +RK     G SD   +     T H  R   S  +  RSS  R    RT   D H++ + R
Sbjct: 347 IRKMAALFGPSDDSIYGKPSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSR 406

Query: 490 ----SQXVRREHTGHRK 528
               S+  R  HT HR+
Sbjct: 407 DYSHSKHERSSHTEHRR 423


>12_01_1012 +
           10298548-10298731,10299141-10299211,10299289-10299349,
           10299689-10299747
          Length = 124

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 412 VGH*IESLLGRELSSGCRNQTVP*IRF 332
           VG   ES++GR L SGCR +T+  I F
Sbjct: 64  VGWFFESVIGRILGSGCRIETMLVILF 90


>09_02_0313 - 7172635-7172856,7173071-7173271
          Length = 140

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 36  SRTGPERNGNLAFSASSTFLRRGSKVKE 119
           SR+GP+ N  L   A+ + LRRG   +E
Sbjct: 4   SRSGPDPNSPLCQEATDSLLRRGDAERE 31


>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
          Length = 973

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = -1

Query: 258 PPVSILNMRKRSVSVKLPFPSSSVMFRSLLILYS---SMGQPAKVFRR*VLSLCFLDGGK 88
           P +S+LN+   S+S K+P   +S+   +LL+L     S   P  +F    L +  L   +
Sbjct: 193 PLLSVLNLGNNSLSGKIPDSIASLSGLTLLVLQDNSLSGPLPPGIFNMSELQVIALAKTQ 252

Query: 87  LMTR*RPNSHSFLVPYVK 34
            +T   P++ SF +P ++
Sbjct: 253 NLTGTIPDNTSFHLPMLQ 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,892
Number of Sequences: 37544
Number of extensions: 380976
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)