Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1855
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...    27   7.7  
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical protein
            T07F10.1b protein.
          Length = 976

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/104 (19%), Positives = 46/104 (44%)
 Frame = +2

Query: 89   FPPSRKQSERTYLLKTLAGCPIEEYKINRLLNITLLEGNGNFTDTDLFLIFSMLTGGSQG 268
            +   R Q E+  L+  L  C  +   + +LL   +     +F   D   +F+ ++     
Sbjct: 825  YKTERNQVEKLNLMTALT-CSKDILTLKKLLLDAMKPEGSSFRLQDCAALFAKISSNDAT 883

Query: 269  YTTLFHFLNNNWAVLKEKFASKTNLWDSLISAATGQFTTQEGLD 400
               + +FL + W  ++++ A+  + +  ++S+      T+ GLD
Sbjct: 884  TDAMLNFLIDRWEDMQKRLATDHSGFSRVLSSIVNTLKTRGGLD 927


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical protein
            T07F10.1a protein.
          Length = 988

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/104 (19%), Positives = 46/104 (44%)
 Frame = +2

Query: 89   FPPSRKQSERTYLLKTLAGCPIEEYKINRLLNITLLEGNGNFTDTDLFLIFSMLTGGSQG 268
            +   R Q E+  L+  L  C  +   + +LL   +     +F   D   +F+ ++     
Sbjct: 837  YKTERNQVEKLNLMTALT-CSKDILTLKKLLLDAMKPEGSSFRLQDCAALFAKISSNDAT 895

Query: 269  YTTLFHFLNNNWAVLKEKFASKTNLWDSLISAATGQFTTQEGLD 400
               + +FL + W  ++++ A+  + +  ++S+      T+ GLD
Sbjct: 896  TDAMLNFLIDRWEDMQKRLATDHSGFSRVLSSIVNTLKTRGGLD 939


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = +2

Query: 173 RLLNITLLEGNGNFTDTDLFLIFSMLTGGSQGYTTLFHFLNNNWAVLKEKFASK 334
           RLL  +LLE  GN+T   LF+  S     + GY      +  N +V KEKF+ K
Sbjct: 214 RLLLKSLLEYIGNWTTGKLFIYLSKTIDRATGYLNEKR-VKANASVEKEKFSEK 266


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 305  AVLKEKFASKTNLWDSLISAATGQFTTQEGLDLVSNLYVAHQGEFGSAEHIIET 466
            AVL ++     +L D  I  + G   T   +DLVS   + H  E  S+  ++ET
Sbjct: 1261 AVLNDRIVK--SLQDICIENSAGHHATMAAVDLVSTDQIRHCIEANSSHPLLET 1312


>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +2

Query: 284 HFLNNNWAVLKEKFASKTNLWDSLISAATGQFTTQEGL---DLVSNLYVAHQGEFGS-AE 451
           HF++N       +   K N   +L   A+  FTTQE +   +     ++A  G+ G+ A+
Sbjct: 215 HFVSNVDGTHVAEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAK 274

Query: 452 HIIETSMKKIXEEAKXSVENIPVIEKW 532
           H +  S   + +  +  ++   + E W
Sbjct: 275 HFVALS-TNVTKAVEFGIDEKNMFEFW 300


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +2

Query: 284 HFLNNNWAVLKEKFASKTNLWDSLISAATGQFTTQEGL---DLVSNLYVAHQGEFGS-AE 451
           HF++N       +   K N   +L   A+  FTTQE +   +     ++A  G+ G+ A+
Sbjct: 180 HFVSNVDGTHVAEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAK 239

Query: 452 HIIETSMKKIXEEAKXSVENIPVIEKW 532
           H +  S   + +  +  ++   + E W
Sbjct: 240 HFVALS-TNVTKAVEFGIDEKNMFEFW 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,581
Number of Sequences: 27780
Number of extensions: 312406
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)