Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1853
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        30   0.40 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   5.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.0  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   6.6  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 290  KQILNRISV*EYNCAIFSFFLILCTEI*GLILKHSIIDYFVNL 418
            K+ L   SV + +C +   FL +C +   + L  S++DYF+N+
Sbjct: 3829 KEKLRSSSVDKMSCQLLMLFLPVCEQF--INLAESVLDYFINV 3869


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 397 YRLFCKFIYV*NKPLF-FGLGAEPLARRSPRLRGARCDDLQMLQTAGSRSFRAL 555
           +R  CK ++   KP+F F  GA  L R++ + R AR  D +   T  +    AL
Sbjct: 59  FRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENATVTANKLLAL 112


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436  PLFFGLGAEP-LARRSPRLRGARCDDLQMLQTAGSRSFRAL 555
            P  FG   +P LAR  P +     DD +++QTA  R+ + +
Sbjct: 1746 PATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMI 1786


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 435 LVSNINKFTK*SIMECFKIKPYISVHKIKKKLNI 334
           ++SN+N+ T    + CFK +PY +    ++K+++
Sbjct: 275 VLSNLNEKTHHFFISCFKKQPYNNPKFFRRKVDL 308


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 617 HATNIQVSECWKRAQGSA*CGRALKLREPAVCNICRSSHRAPLRRGDLLARGSAPSPKKR 438
           H ++IQ  +   +A+GS   G+ALK       N      + P   G L AR  A   ++R
Sbjct: 204 HFSSIQKPKL--KAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRR 261

Query: 437 GLFQT*INLQNNR 399
              Q    L+  +
Sbjct: 262 RSAQNSAKLEKEK 274


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 45  LFTIYFFSYKRFLKHMIAFLNSSFGLII 128
           +FT YF SY  F   + +FL  S+GL I
Sbjct: 359 IFT-YFMSYYIFSNFLTSFLQVSYGLSI 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,500
Number of Sequences: 5004
Number of extensions: 57851
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)