Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1853
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548           28   6.9  
02_04_0270 - 21439788-21441680                                         28   9.1  

>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
          Length = 529

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +1

Query: 394 HYRLFCKFIYV*NKPLFFGLGAEPLARRSPRLRGARCDDLQMLQTAGSRSFRALPH*ALP 573
           HY L C ++YV   P  FGL  +    + PR + +    +Q  +  G       P    P
Sbjct: 201 HYALNCPWVYVKEAP-SFGLAGQTSLNQPPRTKSSLQPSVQSEELNGDNPLN--PRKCFP 257

Query: 574 CALFQH 591
            +L  H
Sbjct: 258 PSLSHH 263


>02_04_0270 - 21439788-21441680
          Length = 630

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 551 ALKLREPAVCNICRSSHRAPLRRGDLLAR-GSAP 453
           +L  R   V + C +  RAPLRRGDL  R G  P
Sbjct: 21  SLSSRGLRVPSPCEARPRAPLRRGDLAIRMGGGP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,930
Number of Sequences: 37544
Number of extensions: 325120
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)