Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1853
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical...    29   2.7  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    29   4.7  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    29   4.7  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    29   4.7  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    29   4.7  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    29   4.7  
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    29   4.7  

>AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical
           protein Y43F8C.19 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +2

Query: 236 IYINVCFKISRRNRAIHYKQILNRISV*EYNCAIFSFFLILCTEI*GLIL----KHSIID 403
           +Y      I +     H K + N      + CA+FSF L +   +  + L       I D
Sbjct: 199 LYFTSILYILKTKTLSHGKLLKNSTEFIIFKCAVFSFVLFIPNALKSIFLYFYIGEQIFD 258

Query: 404 YFVNLFMFETSLFFLG 451
           +  +L+ F T +  +G
Sbjct: 259 WITDLWYFTTEIMCIG 274


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410  VNLFMFETSLFFLGWGPNLLRGGPRA*GARDVTICRCCRPRAHGVLGPY 556
            +NLF++ TS+ FL W P  +        A+ + ICR  RP     L P+
Sbjct: 942  MNLFIYFTSVIFLAWMPKHVEINSL---AQFLMICRAMRPLRIYTLVPH 987


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410  VNLFMFETSLFFLGWGPNLLRGGPRA*GARDVTICRCCRPRAHGVLGPY 556
            +NLF++ TS+ FL W P  +        A+ + ICR  RP     L P+
Sbjct: 976  MNLFIYFTSVIFLAWMPKHVEINSL---AQFLMICRAMRPLRIYTLVPH 1021


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410  VNLFMFETSLFFLGWGPNLLRGGPRA*GARDVTICRCCRPRAHGVLGPY 556
            +NLF++ TS+ FL W P  +        A+ + ICR  RP     L P+
Sbjct: 1034 MNLFIYFTSVIFLAWMPKHVEINSL---AQFLMICRAMRPLRIYTLVPH 1079


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410  VNLFMFETSLFFLGWGPNLLRGGPRA*GARDVTICRCCRPRAHGVLGPY 556
            +NLF++ TS+ FL W P  +        A+ + ICR  RP     L P+
Sbjct: 1087 MNLFIYFTSVIFLAWMPKHVEINSL---AQFLMICRAMRPLRIYTLVPH 1132


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410  VNLFMFETSLFFLGWGPNLLRGGPRA*GARDVTICRCCRPRAHGVLGPY 556
            +NLF++ TS+ FL W P  +        A+ + ICR  RP     L P+
Sbjct: 1006 MNLFIYFTSVIFLAWMPKHVEINSL---AQFLMICRAMRPLRIYTLVPH 1051


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 395 WNVLKLNLIFQYIRLKKN*I*RNY-----TLKPKFYSVFACSEWLYFD 267
           + +L ++ IF+Y+ LK N I +NY      L    Y +F  S W   D
Sbjct: 100 YGILNIHFIFRYLSLKSNNIIKNYFMPYGLLLSVIYVLFHMSIWAMID 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,410
Number of Sequences: 27780
Number of extensions: 314795
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)