Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1852
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   2.8  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   4.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   4.8  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    25   6.4  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   8.5  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  

>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 218 VQNCYKNTCQMRSEKKKKVDVVARSMMFVACGQW-NLSCRFLCDHAS 81
           VQ  ++N C+ + +K+  +D +  +M  + CGQW N   + + +H S
Sbjct: 421 VQTIFEN-CKEK-DKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGS 465


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 LFATHLASVFVTVLYTSLMRIFNNNNI 254
           +F T   S  + V Y  ++R+FN NN+
Sbjct: 308 IFWTSSQSSLMFVFYEGIIRLFNKNNV 334


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 226 KEVYKTVTKTLAKCVAKRKKKLTWSRAR*CLLLAVNGT*VVGSCATTPPPEPRSLVGRVR 47
           K+  +T  + +  C+A R+KKL     R C       T  + SC    P +  +   R  
Sbjct: 10  KKSGQTSRRAIHSCLACRRKKLKCDHGRPCSNCLKRST--IQSCIYIDPGK-TNYDKRFE 66

Query: 46  RGQERLALTQKVLGR 2
           RG E   L  ++L R
Sbjct: 67  RGSEADELIDQLLSR 81


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 128 KQQTSSSARPRQLFFS 175
           ++  SSSA+PRQ FFS
Sbjct: 69  RESASSSAKPRQSFFS 84


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 13  PFESKPTSPARGAPCRPTNEA 75
           P  S PT+PA   P  PT E+
Sbjct: 233 PASSTPTAPAEKEPTAPTTES 253


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 440 HYNNGFLDYIKNDKDIENLHLNRP*EP 360
           +++N     +KN  DI+ LH+NR  +P
Sbjct: 14  YFSNKKKPTVKNTSDIDLLHINRGRQP 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,786
Number of Sequences: 5004
Number of extensions: 38780
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)