Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1852
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0073 - 955746-955758,955811-956832                               28   6.6  
10_01_0072 - 918323-918335,918388-919409                               28   6.6  
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915...    28   6.6  
12_02_0783 + 23125786-23126037,23126867-23127784                       27   8.7  

>10_01_0073 - 955746-955758,955811-956832
          Length = 344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 28  PTSPARGAP-CRPTNEALAEAWSHKNRQLRFH*PQATNIIERAT 156
           P  PA  AP   P N A ++ W H  +Q + H P+    +   T
Sbjct: 79  PPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPREHKALHNLT 122


>10_01_0072 - 918323-918335,918388-919409
          Length = 344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 28  PTSPARGAP-CRPTNEALAEAWSHKNRQLRFH*PQATNIIERAT 156
           P  PA  AP   P N A ++ W H  +Q + H P+    +   T
Sbjct: 79  PPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPREHKALHNLT 122


>09_02_0423 +
           9153088-9153181,9153281-9153378,9153532-9153708,
           9153827-9153927,9154334-9154490
          Length = 208

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 84  GVVAQEPTTQVPLTASNKHHRARDHVNFFFLFATHLASVFVTVLYTSLMRIFNNN 248
           G     PT  VPL   N H +AR  V    LF T + ++  T+  T L  I   +
Sbjct: 47  GTAVMIPTMLVPLMGGNDHDKAR--VVQTLLFVTGIKTLLQTLFGTRLPTIIGGS 99


>12_02_0783 + 23125786-23126037,23126867-23127784
          Length = 389

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 136 LLLAVNGT*--VVGSCATTPPPEPRSLVGRVRRGQ 38
           LLLA  G    + GS   TP P PR   G  RRGQ
Sbjct: 157 LLLAATGQSWRLRGSPPPTPTPPPRRATGERRRGQ 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,481
Number of Sequences: 37544
Number of extensions: 244154
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)