Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1852
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical ...    28   5.9  
U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical
           protein F56E10.1 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 225 RKCTKLLQKHLPNA*RKEKKS*RGRALDDVCCLRSMEPELS 103
           R   KL +K + NA  KEK+  +   +  +C + + EP  S
Sbjct: 168 RNLAKLCEKEVENADEKEKEQLKSEEIQHLCQVLAYEPNSS 208


>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = -2

Query: 446 YPHYN----NGFLDY-IKNDKDIENLHLNR 372
           +P YN    N FL Y I+N  ++E+LHLNR
Sbjct: 534 HPLYNINHLNTFLHYLIQNSDELESLHLNR 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,513,092
Number of Sequences: 27780
Number of extensions: 226836
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)