Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1850
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 48 6e-06
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 48 6e-06
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 48 8e-06
07_01_1136 + 10668637-10669665,10670259-10670282 46 3e-05
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 44 1e-04
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 40 0.002
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 38 0.006
07_03_1439 - 26556398-26556418,26556700-26557743 35 0.060
04_03_0305 - 14125193-14125421,14125666-14127104 35 0.060
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 31 0.98
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 30 2.3
04_04_1635 - 34943881-34945233,34945321-34945524 29 5.2
04_04_0774 + 27986999-27987278,27987380-27987496,27987605-279877... 28 6.9
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 28 6.9
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 48.4 bits (110), Expect = 6e-06
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = +2
Query: 11 NTTWAHLFMDCMRRRPDSV---CQIDAATGETETNASVLQRSVRLAKYMR--TLGLKPGD 175
NT H + C R P+ C ID ATG T A V + S RLA +R LGL+ G
Sbjct: 32 NTLPLHRY--CFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGG 89
Query: 176 VLALAGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEIKS 295
V+ RN + + ++AA G +T +P+ HEI+S
Sbjct: 90 VVMSLLRNSPEFVLSFFAASRVGAAVTTANPMSTPHEIES 129
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 48.4 bits (110), Expect = 6e-06
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +2
Query: 56 PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
PD+ C I AATG T T A R A + LG+ GD + + +N ++ + ++AA
Sbjct: 55 PDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAAS 114
Query: 236 MNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQ------NQREXYLEA-ARELGLDT-R 391
G T +P EI FK + K+ Q Q E + A +G DT
Sbjct: 115 FLGAVTTAANPFCTPQEIHKQFKASGVKLILTQSVYVDKLRQHEAFPRIDACTVGDDTLT 174
Query: 392 VITFDGDE 415
VIT D DE
Sbjct: 175 VITIDDDE 182
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 48.0 bits (109), Expect = 8e-06
Identities = 34/114 (29%), Positives = 50/114 (43%)
Frame = +2
Query: 68 CQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGY 247
C ID TGE+ T A V S R A +R +G+ GDV+ RN + + A G
Sbjct: 43 CLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGA 102
Query: 248 PITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDTRVITFDG 409
T +P + HE+ + ++ + E E A E G+ V+T DG
Sbjct: 103 ATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAERGVP--VVTVDG 154
>07_01_1136 + 10668637-10669665,10670259-10670282
Length = 350
Score = 46.0 bits (104), Expect = 3e-05
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 PDSVCQIDAATGETETNASVLQRSVRLAKYMRT-LGLKPGDVLALAGRNHLDLYIPYYAA 232
P + +DAATGE + + L R LA +R+ +GL+ GDV + LD+ + Y+A
Sbjct: 59 PANPALVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFAL 118
Query: 233 LMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDTRVITFDGD 412
L G ++ +P E+ L+ +AF + L A GL T V+ D
Sbjct: 119 LSIGAVVSPANPALTPAEVSRLVSLSGASVAFAVSSTATK-LPA----GL-TTVVLLDSP 172
Query: 413 EPMSKLLXXXXXXXXXXXQPATFDLXKVYVWLISTGGTSGVLKVAAIKHKVWI 571
LL P + + GT+G +K AA+ H+ +I
Sbjct: 173 H-FRSLLMDCGQAQGQEPLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFI 224
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +2
Query: 74 IDAATGETETNASVLQRSVRLAKYMR-TLGLKPGDVLALAGRNHLDLYIPYYAALMNGYP 250
+DAATG + + + R LA + +LGL+PGDV + + LD+ + Y+A + G
Sbjct: 79 VDAATGIAVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVV 138
Query: 251 ITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDTRVITFDGDEPMSKL 430
++ +P E +L++P IAF AAR +RV+ G E +
Sbjct: 139 VSPANPASTADEYAHQVRLSRPAIAFVAPE------VAARLPRHVSRVVI--GSEVFDR- 189
Query: 431 LXXXXXXXXXXXQPATFDLXKVYVWLISTGGTSGVLKVAAIKHK 562
L PA L+ + GT+G +K AI H+
Sbjct: 190 LASASAAGGWAAPPAVAMKQPSTAALLYSSGTTGRVKAVAITHR 233
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 3/127 (2%)
Frame = +2
Query: 41 CMRRRPDSV---CQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDL 211
C + P+ C ID TG + V + S R A +R LG+ GDV+ RN +
Sbjct: 35 CFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEF 94
Query: 212 YIPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDTR 391
+ A G T +P + HEI ++ + E A + G+
Sbjct: 95 AFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRGFAADRGIP-- 152
Query: 392 VITFDGD 412
V+ DGD
Sbjct: 153 VVAVDGD 159
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 38.3 bits (85), Expect = 0.006
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 1/170 (0%)
Frame = +2
Query: 56 PDSVCQIDAATGETETNASVLQRSVRLAKYMR-TLGLKPGDVLALAGRNHLDLYIPYYAA 232
P +DAATG + S L LA + +LGL+PGDV + + L++ + +A
Sbjct: 60 PGRPALVDAATGIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFAL 119
Query: 233 LMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDTRVITFDGD 412
+ G ++ +P+ E L++P +AF E A +L R + D
Sbjct: 120 MSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAP-------EVAAKLPEHVRCVVIGSD 172
Query: 413 EPMSKLLXXXXXXXXXXXQPATFDLXKVYVWLISTGGTSGVLKVAAIKHK 562
E +L A V + + GT+G +K AI H+
Sbjct: 173 E-YGRLAASDGRRAAAPAAVAVKQSDTAAV--LYSSGTTGRVKAVAITHR 219
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 35.1 bits (77), Expect = 0.060
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +2
Query: 26 HLFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHL 205
H+ + R RP V DA+TG + A + S+R+A+ + GL+ G V L N L
Sbjct: 41 HMLLPGRRARPAFV---DASTGAALSFAGLRALSLRVARALAAAGLRRGRVALLLSPNSL 97
Query: 206 DLYIPYYAALMNGYPITGVDPLFKLHEI 289
A L G ++ +PL E+
Sbjct: 98 HFPALSLAVLSLGAVLSAANPLLTPDEL 125
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 35.1 bits (77), Expect = 0.060
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +2
Query: 59 DSVCQIDAATG-ETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
D V ++AA G + T V + + R A+ +R++G++ G V+ +A N L +Y +
Sbjct: 48 DRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPN-LAVYPVVSLGI 106
Query: 236 MN-GYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQ 337
M+ G +GV+P EIK + ++ K+ +
Sbjct: 107 MSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANE 141
>04_04_1568 - 34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 201 WFLPASASTSPGLRPSVRMYLANRTDRCSTDAFVSVSP 88
W LP S G++P + M +RT DAF++ P
Sbjct: 1238 WTLPQSVLALAGVKPPICMKFLSRTTNIKVDAFIAKLP 1275
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +2
Query: 47 RRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRT--LGLKPGDVLALAGRNHLDLYIP 220
RR V +DAATG T + + A + + L+ G V + N + +
Sbjct: 46 RRHSGVVALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVA 105
Query: 221 YYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAF 328
AA+ G +T +PL EI +P +AF
Sbjct: 106 ALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAF 141
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 80 AATGETETNASVLQRSV--RLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPI 253
A G+ + + + L V A+ G+ PG V+ALA N ++L I + A +
Sbjct: 24 AVPGKVDLSHAALDALVDAAAARLAADAGVLPGHVVALAFPNTVELVIMFLAVIRARAVA 83
Query: 254 TGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGL 382
++P + E + + + ++ AA +LGL
Sbjct: 84 APLNPAYTQEEFEFYLSDSGARLLITNPEGNVAAQAAASKLGL 126
>04_04_0774 +
27986999-27987278,27987380-27987496,27987605-27987759,
27987855-27987929,27988025-27988321,27988448-27988780,
27988880-27988996
Length = 457
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 204 KWFLPASASTSPGLRPSVRMYLANRTDRCS 115
KW+LP T PGL S R L + D S
Sbjct: 250 KWWLPVPCVTKPGLTESARRDLRQKHDCAS 279
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 56 PDSVCQIDAATGE-----TETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIP 220
P +V DAA G E ++VL +V L+ G++PGD + L N + +
Sbjct: 46 PSAVALADAAAGGRALTFAELRSAVLSTAVALSS---RAGVRPGDAVLLLAPNCVLYPVC 102
Query: 221 YYAALMNGYPITGVDPLFKLHEI 289
++A G T V+P + EI
Sbjct: 103 FFAVTALGAVGTTVNPDYTPREI 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,179
Number of Sequences: 37544
Number of extensions: 286197
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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