Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1850
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    53   2e-07
U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical p...    38   0.008
Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical pr...    37   0.013
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    35   0.071
AF125955-10|AAV58866.1|  578|Caenorhabditis elegans Hypothetical...    33   0.16 
AF125955-9|AAV58865.1|  597|Caenorhabditis elegans Hypothetical ...    33   0.16 
AF125955-8|AAD14712.1|  623|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 6/183 (3%)
 Frame = +2

Query: 29  LFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLD 208
           LF+D +++ P+    ID  T  TET A       R A Y + LG + GDV+AL   N ++
Sbjct: 114 LFLDIVKKNPNKPAMIDIETNTTETYAEFNAHCNRYANYFQGLGYRSGDVVALYMENSVE 173

Query: 209 LYIPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQREXYLEAARELGLDT 388
               +      G     ++   K  ++      ++ K        +   L+A  +   D 
Sbjct: 174 FVAAWMGLAKIGVVTAWINSNLKREQLVHCITASKTKAIITSVTLQNIMLDAIDQKLFDV 233

Query: 389 RVI-TFDGDEPMSK---LLXXXXXXXXXXXQPATFDL--XKVYVWLISTGGTSGVLKVAA 550
             I  +   EP                   +P T D+   K  +  I T GT+G+ K A 
Sbjct: 234 EGIEVYSVGEPKKNSGFKNLKKKLDAQITTEPKTLDIVDFKSILCFIYTSGTTGMPKAAV 293

Query: 551 IKH 559
           +KH
Sbjct: 294 MKH 296


>U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical
           protein ZK1127.2 protein.
          Length = 565

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
 Frame = +2

Query: 8   LNTTWAH--LFMDCM---RRRPDSVCQIDAATGETETNASVLQRSVR-LAKYMRTLGLKP 169
           L+TT  H  +F  C        D+VC IDA T   +     ++ +V  LA  +  LG KP
Sbjct: 12  LSTTTVHERIFEACRIHASANKDAVCFIDAETTTKKKLYKDVEPTVNSLATALVKLGFKP 71

Query: 170 GDVLALAGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQ 343
           GDV + A  N  +  +   A +  G  ++    +F  +E++  F  +   I F  +++
Sbjct: 72  GDVASQAFPNCPEFLVAMLAVMKCGGAMSNASAIFTDYELQLQFCDSNTSIVFTDEDR 129


>Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical
           protein AH10.1 protein.
          Length = 566

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +2

Query: 59  DSVCQIDAATGETETNASVLQRSVR-LAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
           D++  IDA T   +     ++ +V  LA  +  LG KPGDV A A  N  +  I   A +
Sbjct: 34  DAIVFIDAETTTKKKLYRDVEPTVNSLATALVKLGFKPGDVAAQAFPNCPEFLIAMLAVM 93

Query: 236 MNGYPITGVDPLFKLHEIKSFFKLTQPKIAFCQQNQ 343
             G  ++    +F  +E++  FK +   I F  +++
Sbjct: 94  KCGGAMSNASAIFTDYELQLQFKDSNTSIVFTDEDR 129


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +2

Query: 131 RLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAALMNGYPITGVDPLFKLHEIKSFFKLT 310
           ++A  + TLGL+ GD + + G N+ +  +  YA    G     V+P +   E++   + T
Sbjct: 98  QMAASLYTLGLEKGDRVGVWGPNYYEWVVLQYACAFAGVIQVNVNPHYLHEELRFVMRKT 157

Query: 311 QPKIAFCQQNQR 346
             K+ F  +  +
Sbjct: 158 GMKVLFAPKRHK 169


>AF125955-10|AAV58866.1|  578|Caenorhabditis elegans Hypothetical
           protein F46E10.1c protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 56  PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
           PD    I    G  +T + V   +  LA  +  LGLK GD + + G N  +     +A+ 
Sbjct: 35  PDKEFLIFKREGIRKTYSQVATDAENLACGLLHLGLKKGDRIGIWGPNTYEWTTTQFASA 94

Query: 236 MNGYPITGVDPLFKLHEIK 292
           + G  +  ++P ++  E++
Sbjct: 95  LAGMVLVNINPSYQSEELR 113


>AF125955-9|AAV58865.1|  597|Caenorhabditis elegans Hypothetical
           protein F46E10.1b protein.
          Length = 597

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 56  PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
           PD    I    G  +T + V   +  LA  +  LGLK GD + + G N  +     +A+ 
Sbjct: 54  PDKEFLIFKREGIRKTYSQVATDAENLACGLLHLGLKKGDRIGIWGPNTYEWTTTQFASA 113

Query: 236 MNGYPITGVDPLFKLHEIK 292
           + G  +  ++P ++  E++
Sbjct: 114 LAGMVLVNINPSYQSEELR 132


>AF125955-8|AAD14712.1|  623|Caenorhabditis elegans Hypothetical
           protein F46E10.1a protein.
          Length = 623

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 56  PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKPGDVLALAGRNHLDLYIPYYAAL 235
           PD    I    G  +T + V   +  LA  +  LGLK GD + + G N  +     +A+ 
Sbjct: 80  PDKEFLIFKREGIRKTYSQVATDAENLACGLLHLGLKKGDRIGIWGPNTYEWTTTQFASA 139

Query: 236 MNGYPITGVDPLFKLHEIK 292
           + G  +  ++P ++  E++
Sbjct: 140 LAGMVLVNINPSYQSEELR 158


>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 44  MRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKP 169
           M    D+V  +    GET    +VLQRS+ + +Y+  LG  P
Sbjct: 403 MNENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYLLELGASP 444


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 44  MRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLKP 169
           M    D+V  +    GET    +VLQRS+ + +Y+  LG  P
Sbjct: 403 MNENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYLLELGASP 444


>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 173 DVLALAGRNHLDLYIPYYAALMNG--YPITGVDPLF 274
           D + +A   H  +Y+PY+ +L+ G    ITGV  +F
Sbjct: 190 DDMFIADHRHWKIYVPYFCSLIFGAWCSITGVTSVF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,592
Number of Sequences: 27780
Number of extensions: 247039
Number of successful extensions: 505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)