Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1849
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.58 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.0  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   3.1  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   3.1  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    24   9.4  
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    24   9.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   9.4  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 335 NSKRVPLPPFLARNKATAPAFSIPSSNLSI-DCDICESFASINLSRLLIRGSSTPSDTFS 159
           N  R P P    R+    P+F   +S+LS+   D+     S       + G   PS + S
Sbjct: 696 NMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMS 755

Query: 158 VF 153
           ++
Sbjct: 756 LY 757


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -2

Query: 341 SFNSKRVPLPPFLARNKATAPAFSIPSSNLSID---CDICESFASINLSRL-LIRGSSTP 174
           S  + + P P   A N  T+PA   P++  S D    D       ++ S    + GSSTP
Sbjct: 224 SSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283

Query: 173 SDTFS 159
           S+T S
Sbjct: 284 SNTSS 288


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 302 ARNKATAPAFSIPSSNLSIDCDICES 225
           A   ++AP+FS  S N S D D C S
Sbjct: 21  ASTVSSAPSFSFVSGNESADLDSCAS 46


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +1

Query: 10  MSVRFVRTILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNVVGKTLNV 168
           +S RF+R I +LL+ V  SRA  +++VDV        E+I   W  V  TL++
Sbjct: 42  VSSRFMRLIELLLSKVDRSRA--EDIVDV--------EDIDNRWAEVSDTLDI 84


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 355 PSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPA 260
           PS    +TQ+ F ++R+W  T P  + S F A
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSA 139


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 431 FAPIPLXGRRYTLICLSTGAT--LFRRXVMSXS 339
           F P+P     YTL  L T AT   +RR + S S
Sbjct: 398 FNPLPFENEGYTLDVLGTSATCPTWRRSLSSYS 430


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -2

Query: 275 FSIPSSNLSIDCDICESFASINLSRLLIRGSSTPSDTFSVFPTTFH 138
           +S+P   + I   + + + S N + L+ +G +   D  ++FP + +
Sbjct: 93  YSLPDRPIPIVHRVVKLYESENQTHLITKGDNNKIDDVAMFPKSIN 138


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 347 SXSFNSKRVPL---PPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSRLLIRGSST 177
           S + +SK  PL   PP   ++ AT    S+P S    D  +  S +S +   ++++GS  
Sbjct: 379 SENLSSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPSVAASSSSSSQLDVVLKGSI- 437

Query: 176 PSDTFSV 156
             DT SV
Sbjct: 438 -PDTSSV 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,700
Number of Sequences: 5004
Number of extensions: 27870
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)