Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1849
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0980 + 21406822-21409496,21410322-21410376 30 0.99
11_06_0092 + 19973364-19975983,19976272-19976648 29 2.3
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 28 3.0
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 3.0
01_01_0533 + 3917101-3917603,3918312-3919305 28 3.0
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 28 4.0
08_01_0308 - 2617172-2617546 28 4.0
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 27 5.3
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 27 7.0
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 27 7.0
01_01_0535 + 3923433-3923932,3924105-3925098 27 7.0
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 27 9.2
02_04_0539 - 23745936-23746097,23746661-23747566 27 9.2
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 29.9 bits (64), Expect = 0.99
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 379 LAPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAPI 254
L + ++GP AV + W G H PSLF AP+
Sbjct: 836 LPAVAADGPK-PAVEIEKDVWDALEWDGVEADHHPSLFQAPV 876
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 269 IPSSNLSIDCDICESFASINLSRLLIRGSS 180
I SSN+ +D D+ L+R+LI GSS
Sbjct: 824 IKSSNVLLDADMVAHVGDFGLARILIEGSS 853
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 287 TAPAFSIPSSNLSIDCDICESFASINLSRLLI 192
+AP S P + L++DC++C + A L+R+ +
Sbjct: 169 SAPPGSSPYAILALDCEMCVTAAGFELTRVTL 200
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 64 SRALVDEVVDVLKLGKEIGEEIIASWNVV 150
SR +VD+ D+ KL +E+ E+I W ++
Sbjct: 477 SRLVVDDNEDIKKLDRELDIEVILQWRML 505
>01_01_0533 + 3917101-3917603,3918312-3919305
Length = 498
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 58 HNSRALVDE--VVDVLKLGKEIGEEIIASWNVVGKTLNVS 171
H S V+E VVD LK+G E+G + + W K + V+
Sbjct: 398 HCSEQFVNEKLVVDHLKIGVEVGVKGVTQWGTEQKEVKVT 437
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 263 WE*RRPVRWPCSWPRTEGEEPVL 331
W RRP R PC W +GEE VL
Sbjct: 38 WRRRRP-RSPCPWSVEKGEEVVL 59
>08_01_0308 - 2617172-2617546
Length = 124
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 219 GKTLAYIAIDRQIGAGNREGRCGGLVPGQERRERN 323
G T + +A++ + G G+R GG+V Q RR R+
Sbjct: 90 GATGSSLALEGEGGGGSRRPSDGGVVGAQRRRRRS 124
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 34 ILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNVVGKTLN 165
++ LL IV ++ VVD+L +GK+I + + N G +N
Sbjct: 473 VMPLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVGNCTGFAVN 516
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 70 ALVDEVV-DVL-KLGKEIGEEIIASWNV 147
ALV V+ +VL KLG +GE+I+ WN+
Sbjct: 60 ALVSAVLKEVLGKLGSAVGEQIVMRWNL 87
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 34 ILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNVVGKTLN 165
++ LL IV VVD+L +GK+I + I N G +N
Sbjct: 458 VMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVVGNCTGFAVN 501
>01_01_0535 + 3923433-3923932,3924105-3925098
Length = 497
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 85 VVDVLKLGKEIGEEIIASWNVVGKTLNVS 171
VV++LK+G EIG + +A W K + V+
Sbjct: 408 VVNLLKIGLEIGVKGVAQWGSEHKEVRVT 436
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 409 AXGTLSSVCPLAPLCSEGPSCRAVSTQNGFLSL 311
A TL + LA LCSE +C+ G LSL
Sbjct: 691 ASATLKGIKALAELCSEDGACQKRIADLGVLSL 723
>02_04_0539 - 23745936-23746097,23746661-23747566
Length = 355
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -2
Query: 272 SIPSSNLSIDCDICESFASINLSRLLIRGSSTPS 171
++ L+ C++C+S +++ +L+RG +T S
Sbjct: 7 TVGKDGLNFQCNLCDSDVVHSMAEILLRGLATAS 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,001
Number of Sequences: 37544
Number of extensions: 211934
Number of successful extensions: 790
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -