Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1846
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    42   6e-05
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    26   4.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 10/63 (15%)
 Frame = +1

Query: 16  IIYQLQDIFNLLPDIANDNFIDN----------LYVKTNDQSLVVYLAALVRSIIALHNL 165
           I+ +LQ +FNLLP+I +   +              V +NDQ + +Y++++VR++IALH+L
Sbjct: 233 ILAELQSVFNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDL 292

Query: 166 INN 174
           +++
Sbjct: 293 LDS 295


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 510 DYLIF*KFTCTCPGKNKVTYFNKIEKTKV 424
           DY+I  +     P KN VTY  K+E+T V
Sbjct: 25  DYIISTRTGIFDPEKNSVTYPRKVEETAV 53


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 16   IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSL 114
            I+  L D+F+LLP+ AN  F+D L +   + SL
Sbjct: 1460 IVRALIDLFHLLPNNAN-RFMDELLICVVEFSL 1491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,828
Number of Sequences: 5004
Number of extensions: 28219
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)