Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1846
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    78   7e-15
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632...    30   1.8  
10_08_0989 + 22069244-22071679                                         29   3.2  
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791...    29   4.2  

>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 34/58 (58%), Positives = 46/58 (79%)
 Frame = +1

Query: 16  IIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
           I+Y LQD+FNLLP++  +  I    VKTND  LV+YL++L+RS+IALHNLINNK+ N+
Sbjct: 218 ILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNK 275


>03_02_0195 -
           6325907-6326173,6326996-6327149,6327245-6327336,
           6327433-6327534,6328406-6328528,6328635-6328683,
           6328759-6328854,6328937-6329276,6329428-6329643,
           6329759-6329864,6330144-6330192,6330519-6330792,
           6330870-6330960,6331663-6331994,6332084-6332261,
           6332815-6332872,6332956-6333089
          Length = 886

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = -2

Query: 486 TCTCPGKNKVTYFNKIEKTKVQNS----DDIKNLGALN-KERKRTLLKFIHN 346
           T TCP  +K++YFN +    + N     D+I+ L  ++ +ER R L+   H+
Sbjct: 275 TGTCPNLDKLSYFNVVSNMHIGNQINDHDEIEELDHMSLQERYRILMAENHS 326


>10_08_0989 + 22069244-22071679
          Length = 811

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 31  QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
           Q+ +NL   ++    IDN+ VK +++S + Y A L  S+  L  L+N  +  R
Sbjct: 181 QEKYNLF--VSGGPSIDNVIVKVSNESEIHYKARLTYSLRCLRYLLNQGLAFR 231


>08_02_0251 -
           14776308-14776495,14777624-14777708,14779125-14779160,
           14779930-14780177,14780670-14780901,14781159-14781937,
           14781987-14782155
          Length = 578

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 31  QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYLAALVRSIIALHNLINNKITNR 189
           Q+ +NL   ++    IDN+ VK +++S + Y A L  S+     L+N  +T R
Sbjct: 166 QEKYNLF--VSGGPSIDNVIVKVSNESEIWYKARLTYSLRCQRYLLNKGLTFR 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,108,259
Number of Sequences: 37544
Number of extensions: 137750
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)